PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0301319.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HB-other | ||||||||
Protein Properties | Length: 210aa MW: 23005.7 Da PI: 5.0302 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 6e-18 | 44 | 99 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++ ps+e r eL++klgL +rq ++WF+ rR k+kk Lj0g3v0301319.1 44 PKRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKK 99 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 24 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.11E-16 | 36 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.066 | 40 | 100 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-17 | 42 | 104 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-15 | 44 | 99 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.22E-15 | 45 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEGEAGSEGD SNRKRGSADD NSDENRNEGS NSKIANSNDG QGKPKRQMKT PFQLETLEKA 60 YALDKFPSEE VRVELSQKLG LLDRQLQMWF CHRRLKDKKE MALKKQPQKV EVEPLPDSPV 120 DNLRLGPELG NGYASGSGSG SSPFTRLEPR NGVSRGMPGY YESPQAVMER RAIACVEAQL 180 GEPLRDDGPT LGVEFDPLPP GAFGTPIGCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 99 | RRLKDKKE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0301319.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159367.1 | 1e-88 | hypothetical protein PHAVU_002G232200g | ||||
Refseq | XP_028780331.1 | 2e-91 | homeobox-DDT domain protein RLT1-like | ||||
Swissprot | F4HY56 | 4e-54 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | V7CR02 | 2e-87 | V7CR02_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159367.1 | 4e-88 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15781 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 2e-52 | homeobox-1 |