PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0300449.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 206aa    MW: 23194.4 Da    PI: 9.9899
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0300449.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed++l+d+++ +G g+W++ a+  g+ R++k+c++rw +yl
  Lj0g3v0300449.1 14 KGAWSKQEDQKLIDYIRTHGEGCWRSLAKAAGLQRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.12.7e-1568111247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g + ++E++l+++ +++lG++ W++Ia +++ gRt++++k++w+++
  Lj0g3v0300449.1  68 GDFGQDEEDLIIKFHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 111
                      66889****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.51961IPR017930Myb domain
SuperFamilySSF466893.52E-2813108IPR009057Homeodomain-like
SMARTSM007176.6E-141363IPR001005SANT/Myb domain
PfamPF002495.3E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-231568IPR009057Homeodomain-like
CDDcd001671.12E-111661No hitNo description
PROSITE profilePS5129423.80862116IPR017930Myb domain
SMARTSM007171.2E-1366114IPR001005SANT/Myb domain
PfamPF002497.2E-1468111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2369117IPR009057Homeodomain-like
CDDcd001674.47E-1072112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRKPCCDKQQ GPNKGAWSKQ EDQKLIDYIR THGEGCWRSL AKAAGLQRCG KSCRLRWINY  60
LRPDIKHGDF GQDEEDLIIK FHALLGNRWS LIAGRLPGRT DNEVKNYWNS HIRTKLIKMG  120
IDPNNHKLQQ HQHQSFPKVS YASAAATAPS SNLITIMNKE QGVPFIKSNG SVEEAASMVS  180
SSSQLNLDLT IAFPSPRNPL VEDKSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28141167108B-MYB
1h8a_C5e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.259360.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:9839469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0300449.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1442970.0BT144297.1 Lotus japonicus clone JCVI-FLLj-17P9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028200149.11e-94myb-related protein 308-like
SwissprotQ9S9K93e-69MYB3_ARATH; Transcription factor MYB3
TrEMBLI3SUZ91e-153I3SUZ9_LOTJA; Uncharacterized protein
STRINGXP_004490862.13e-93(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-70myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]