PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0300259.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 696aa MW: 79351.7 Da PI: 5.4787

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0300259.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	359.7	4.2e-110	318	693	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l+ lLl c +av s+d+++a+++L+++++++s++gd+ qRla+yf+++L+arl + +++ ++ ++++ ++++ l+a+++ +sP+ kf+ Lj0g3v0300259.1 318 LRALLLLCSQAVYSNDNRAANEFLKQIRDHSSSYGDASQRLAHYFANGLEARLGGDGTGAQIFYSSPSSQRISTAKYLKAYQAHLSTSPFKKFA 411 5789************************************************96555554444444444569999************* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ aN++I+++++++e +HiiDf+i +G+QWp L++ L++R++gpp+l+iTg++ p +g +e++ etg+rL++++++++vpfe+n++++k++ Lj0g3v0300259.1 412 YFFANKMIMKEAAKAESLHIIDFGILYGFQWPILIKFLSERDGGPPKLKITGIEFPLPGfrPTERIDETGHRLTNYCKRFNVPFEYNAIASKNW 505 ****************************************************99999************************99* PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 e++e+++Lr++++E +aVn++++ ++llde+ + ++ +rd+vL+l+++++P++++ + ++ + n++ F++rf eal ++sa fd++++ ++r++ Lj0g3v0300259.1 506 ETIEVKDLRIQTNEFVAVNCMMRFKNLLDETIEENNsPRDAVLQLIRKINPNIFTQSISNGSFNAPFFVTRFREALFHFSATFDMFDTVISRDN 599 *****************************998887***************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++r+ +Ere +gre++nv+aceg er+er et+++W+ r ++aGFk++pl+e +++ ++ l+k + + + +e+++++++gWk+r +++ ++W Lj0g3v0300259.1 600 QWRRLIERESVGREAMNVIACEGLERVERPETYKRWQVRNTRAGFKQLPLNEGLMDKFRTKLKKWYHKDFVFDEDNNWMLQGWKGRIMYASTCW 693 **************************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.077	292	674	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-107	318	693	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence Send to blast
MTDPWFAEEG SILVSDPNQY ASDWDAFQQY ESLSANSNPV EGSVSSMSMN TVTDPSLEDT 60 DFSETALFIS QILMEENVEQ SPFYDSLSLQ LTEKSFHDPL INPSLAPNQQ HPFDFQNSET 120 TTSNSNNSSN SSRELKPPSP DTPVSVLRDN HDFQFNSRPL HDLDSSATNL LAQDIFNDAD 180 SVSLFKRGLE EASKFLPVEP RIVTGLDSNG QPPNMLRLKN RKHHDREEES DSKEEGMRSN 240 KQSAFSVVDE DNNQDLSEMF DKVLLNLEHL PLCNEVHGSQ NGEVKAEKEG EKDKSPSANG 300 GGKGRPKKQG RSKETVDLRA LLLLCSQAVY SNDNRAANEF LKQIRDHSSS YGDASQRLAH 360 YFANGLEARL GGDGTGAQIF YSSPSSQRIS TAKYLKAYQA HLSTSPFKKF AYFFANKMIM 420 KEAAKAESLH IIDFGILYGF QWPILIKFLS ERDGGPPKLK ITGIEFPLPG FRPTERIDET 480 GHRLTNYCKR FNVPFEYNAI ASKNWETIEV KDLRIQTNEF VAVNCMMRFK NLLDETIEEN 540 NSPRDAVLQL IRKINPNIFT QSISNGSFNA PFFVTRFREA LFHFSATFDM FDTVISRDNQ 600 WRRLIERESV GREAMNVIAC EGLERVERPE TYKRWQVRNT RAGFKQLPLN EGLMDKFRTK 660 LKKWYHKDFV FDEDNNWMLQ GWKGRIMYAS TCWVPA

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence Send to blast

MTDPWFAEEG SILVSDPNQY ASDWDAFQQY ESLSANSNPV EGSVSSMSMN TVTDPSLEDT  60
DFSETALFIS QILMEENVEQ SPFYDSLSLQ LTEKSFHDPL INPSLAPNQQ HPFDFQNSET  120
TTSNSNNSSN SSRELKPPSP DTPVSVLRDN HDFQFNSRPL HDLDSSATNL LAQDIFNDAD  180
SVSLFKRGLE EASKFLPVEP RIVTGLDSNG QPPNMLRLKN RKHHDREEES DSKEEGMRSN  240
KQSAFSVVDE DNNQDLSEMF DKVLLNLEHL PLCNEVHGSQ NGEVKAEKEG EKDKSPSANG  300
GGKGRPKKQG RSKETVDLRA LLLLCSQAVY SNDNRAANEF LKQIRDHSSS YGDASQRLAH  360
YFANGLEARL GGDGTGAQIF YSSPSSQRIS TAKYLKAYQA HLSTSPFKKF AYFFANKMIM  420
KEAAKAESLH IIDFGILYGF QWPILIKFLS ERDGGPPKLK ITGIEFPLPG FRPTERIDET  480
GHRLTNYCKR FNVPFEYNAI ASKNWETIEV KDLRIQTNEF VAVNCMMRFK NLLDETIEEN  540
NSPRDAVLQL IRKINPNIFT QSISNGSFNA PFFVTRFREA LFHFSATFDM FDTVISRDNQ  600
WRRLIERESV GREAMNVIAC EGLERVERPE TYKRWQVRNT RAGFKQLPLN EGLMDKFRTK  660
LKKWYHKDFV FDEDNNWMLQ GWKGRIMYAS TCWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-46	301	695	1	379	Protein SCARECROW
5b3h_D	1e-46	301	695	1	379	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.17754	0.0	cell culture

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0300259.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505853.1	0.0	scarecrow-like protein 34
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S2YJS7	0.0	A0A1S2YJS7_CICAR; scarecrow-like protein 34
STRING	XP_004505853.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]