PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0298769.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 357aa MW: 39886.3 Da PI: 5.6615 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.6 | 6.1e-29 | 128 | 189 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ g+ +pr+YYrCt++ gC ++k+v+rs+ed +v+eitY+g+H+++ Lj0g3v0298769.1 128 LDDGYSWRKYGQKDILGAIYPRGYYRCTHRnvqGCLATKQVQRSDEDSTVFEITYRGNHTCT 189 59***************************98999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.066 | 123 | 191 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-28 | 124 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-25 | 127 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-40 | 128 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-26 | 129 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MDNMGDRKSL VHELLQGLEL ARQLQIFIHL PSTSNEAREV LIQRVISSFE KALQIVNRKG 60 TLGESSQQHS GVAIGVAESP QPFSSPCSED SDRDFRDQEQ SPSKKRNTFP RWTKKIRVTP 120 GMGVEGPLDD GYSWRKYGQK DILGAIYPRG YYRCTHRNVQ GCLATKQVQR SDEDSTVFEI 180 TYRGNHTCTM ASNVVVPTQN PPENQESNLN TNSQQQNVLK SLEQEPNLLL LNLRAGLRVQ 240 TENLDNPEYK SLAPFNFPST SNIKIENQIF QSCILESNSF AENFTSNSYM SPATATSGVN 300 NFTGYPNLAS SIDSQISDMV PAAASAANSP TVGLEFPFGQ FEFDGHNFTF DNQRFLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-19 | 114 | 186 | 6 | 74 | Disease resistance protein RRS1 |
5w3x_D | 4e-19 | 114 | 186 | 6 | 74 | Disease resistance protein RRS1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0298769.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027338921.1 | 1e-178 | probable WRKY transcription factor 53 | ||||
TrEMBL | A0A0B2SHC4 | 1e-167 | A0A0B2SHC4_GLYSO; Putative WRKY transcription factor 30 | ||||
STRING | GLYMA04G41701.1 | 1e-166 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 1e-51 | WRKY family protein |