PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0294559.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 308aa    MW: 35055.5 Da    PI: 4.5211
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0294559.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.21.6e-113176144
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E..EEEEEE-TTS CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae..vaviifsstg 44
                     kri++++ r++tf  Rr+g+lKK +  S+ Cd +  +++i++  +g
  Lj0g3v0294559.1 31 KRIQDNRVRKTTFLHRRKGLLKKMSDFSTICDSQsnACLIVYDGDG 76
                     79*****************************975449999996655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.1942383IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-1323101IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-102387IPR002100Transcription factor, MADS-box
CDDcd002661.06E-1524100No hitNo description
PfamPF003191.4E-103276IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MTFFFLNLSS FVSSYRSLFY PKMGRAKAIM KRIQDNRVRK TTFLHRRKGL LKKMSDFSTI  60
CDSQSNACLI VYDGDGGHDS TPEIWPQNPT VVHSVLQKYE CEKNNKTTPV MKFELEEFFE  120
TKKKSVEDEI AKVKKEIINL KFPTWDPIFL SLGKERLGPL IAELDAKISA CDQRVNLLKG  180
MQESEVINAN MAQEEEDISE THVISAPISP VIDGMVDSTE QVNGHLECTN QVIDEMVDST  240
DQVNGTLDCT NQVFEPVDSD SGLEEWACKF LESDYWANQQ GEPVDSASGL EDWACKFPER  300
ANQQGYWY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0294559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103230.0AP010323.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT46D24, TM1209b, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-14M-type_MADS family protein