PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0291669.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GeBP | ||||||||
Protein Properties | Length: 215aa MW: 24176.6 Da PI: 9.6752 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 93.4 | 2.4e-29 | 15 | 106 | 2 | 93 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 f++lw +eDei++L+Gl df +ktg +p + +dafy+fv ks+++++++ ql +K rrLKkKf+k+ k k+g++p+f k+hdqk+fel++ Lj0g3v0291669.1 15 PFRKLWCDEDEITILKGLPDFISKTGNDPLKYVDAFYDFVIKSLQVDANHAQLKDKARRLKKKFEKHACKGKNGESPKFPKAHDQKAFELAN 106 6899**************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.7E-26 | 16 | 107 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEEDGKMPDN DSKKPFRKLW CDEDEITILK GLPDFISKTG NDPLKYVDAF YDFVIKSLQV 60 DANHAQLKDK ARRLKKKFEK HACKGKNGES PKFPKAHDQK AFELANKKEA NSSSKNVASS 120 AKKAKAEARQ EPPPPESDMQ DVKADDTSVL LSEMSGLNED VVKKGLELIG ASKRAQLAGR 180 WKKIQVAELE LFAKRAQLVE EQTRLILEAY KSSKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.2094 | 1e-76 | cell culture| floral bud| flower| pod| protoplast| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0291669.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541767.1 | 6e-60 | STOREKEEPER protein | ||||
Refseq | XP_027329839.1 | 3e-60 | probable transcription factor At1g11510 | ||||
Refseq | XP_027329849.1 | 3e-60 | probable transcription factor At1g11510 | ||||
Refseq | XP_027329858.1 | 3e-60 | probable transcription factor At1g11510 | ||||
Refseq | XP_028188775.1 | 6e-60 | STOREKEEPER protein-like | ||||
TrEMBL | A0A445I9S7 | 1e-58 | A0A445I9S7_GLYSO; Putative transcription factor isoform A | ||||
TrEMBL | K7M1T5 | 1e-58 | K7M1T5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G32440.2 | 2e-59 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 5e-20 | DNA-binding storekeeper protein-related transcriptional regulator |