PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0290329.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 282aa    MW: 32570.9 Da    PI: 5.7597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0290329.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.7e-07199218625
                      -SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                      C+f+++tG C++G rC++ H
  Lj0g3v0290329.2 199 CPFHLKTGACRFGQRCSRVH 218
                      ******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.911193221IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5199218IPR000571Zinc finger, CCCH-type
PRINTSPR018486.2E-13199218IPR009145U2 auxiliary factor small subunit
PRINTSPR018486.2E-13218238IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEENMEVSGS GGRKEKRKEM KRLKRKQKRK EMAEKERMEE EARLNDPEEL MRLQLIEQQE  60
AERMEKDRIA FDQREKAFIE TINLNKQLQL QLQQQSPKSN HNTGVDVDVD DEYVEMEEEG  120
PPEIIWQGNE IIFKKKKVRV RVSDKEANPI HSQGVVGDDR PTSNPFPPES QSHTNSAALL  180
DNVARQVPNF GTEQDKDHCP FHLKTGACRF GQRCSRVHFY PDKSCTILIK NMYNGPGLAW  240
EQDEGLEVCS FCQAIAQSWL MELCCRLVVM TFKGFEIAAA KP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11523KRKEMKRLK
22028KRLKRKQKR
32228LKRKQKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0290329.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015949895.11e-92zinc finger CCCH domain-containing protein 5 isoform X3
RefseqXP_020991180.11e-92zinc finger CCCH domain-containing protein 5 isoform X3
RefseqXP_025650877.11e-92zinc finger CCCH domain-containing protein 5 isoform X3
RefseqXP_025650880.11e-92zinc finger CCCH domain-containing protein 5 isoform X3
SwissprotQ9SY741e-75C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A445CI721e-90A0A445CI72_ARAHY; Uncharacterized protein
STRINGXP_010252404.12e-77(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.17e-52C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]