PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0290329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 277aa MW: 32350.5 Da PI: 5.9632 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 6.6e-07 | 199 | 218 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H Lj0g3v0290329.1 199 CPFHLKTGACRFGQRCSRVH 218 ******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.911 | 193 | 221 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-5 | 199 | 218 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 6.0E-13 | 199 | 218 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 6.0E-13 | 218 | 238 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MEENMEVSGS GGRKEKRKEM KRLKRKQKRK EMAEKERMEE EARLNDPEEL MRLQLIEQQE 60 AERMEKDRIA FDQREKAFIE TINLNKQLQL QLQQQSPKSN HNTGVDVDVD DEYVEMEEEG 120 PPEIIWQGNE IIFKKKKVRV RVSDKEANPI HSQGVVGDDR PTSNPFPPES QSHTNSAALL 180 DNVARQVPNF GTEQDKDHCP FHLKTGACRF GQRCSRVHFY PDKSCTILIK NMYNGPGLAW 240 EQDEGLERFI ARYILVEAHD FCLGWFQVKD ITCFVRQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 23 | KRKEMKRLK |
2 | 20 | 28 | KRLKRKQKR |
3 | 22 | 28 | LKRKQKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0290329.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015949895.1 | 1e-92 | zinc finger CCCH domain-containing protein 5 isoform X3 | ||||
Refseq | XP_020991180.1 | 1e-92 | zinc finger CCCH domain-containing protein 5 isoform X3 | ||||
Refseq | XP_025650877.1 | 1e-92 | zinc finger CCCH domain-containing protein 5 isoform X3 | ||||
Refseq | XP_025650880.1 | 1e-92 | zinc finger CCCH domain-containing protein 5 isoform X3 | ||||
Swissprot | Q9SY74 | 6e-76 | C3H5_ARATH; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | A0A445CI72 | 1e-91 | A0A445CI72_ARAHY; Uncharacterized protein | ||||
STRING | XP_010252404.1 | 2e-77 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 3e-52 | C3H family protein |
Publications ? help Back to Top | |||
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