PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0290279.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 222aa MW: 26247.9 Da PI: 8.6929 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.5 | 6.3e-10 | 34 | 61 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++G tC++G C+F+H+ Lj0g3v0290279.2 34 WKVAICGEYMKSGfkTCSHGTACNFIHC 61 899************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.465 | 33 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-4 | 33 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-7 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MQFLIKVFLS GIVFQQSVYG LWQVSCEFIN LTRWKVAICG EYMKSGFKTC SHGTACNFIH 60 CFRNPGGDYE WADSDKPPPK FWVRKMAALF GYSDDYEILR EQGNLSGQSY RNMSKTDSDR 120 QHSRRSQSGE MDQLNSGYSD RRKHEDERNQ RTPNEGKKRR DRTPDTDSDK EWLEEEEDRV 180 KHHRYTRKSS INKNNKRSHE EDSDVDWTTK TRGNKKQHDR EG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 159 | RRKHEDERNQRTPNEGKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0290279.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-47 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014518349.1 | 4e-92 | zinc finger CCCH domain-containing protein 5 isoform X2 | ||||
Swissprot | Q9SY74 | 7e-45 | C3H5_ARATH; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | A0A1S3VJT6 | 1e-90 | A0A1S3VJT6_VIGRR; zinc finger CCCH domain-containing protein 5 isoform X2 | ||||
STRING | XP_007148590.1 | 4e-91 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 2e-44 | C3H family protein |
Publications ? help Back to Top | |||
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