PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0288879.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 116aa    MW: 12921.3 Da    PI: 10.6236
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0288879.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.7e-11551033685
                      EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3  36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      l+l+   g   + kl  +k+++ + +++GWk+F+  ng+++gD + Fk++
  Lj0g3v0288879.2  55 LKLRGHVGDDITCKL-LSKNKKDVRIGSGWKKFCTRNGVRAGDLCCFKFT 103
                      777788888888888.58888899************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-1122104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-1029105IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-855104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MSQMFPAPKQ PEIPMIYKNS SGSAVVFWFK NKNPSCVALP AKIVVSIRQF GVSPLKLRGH  60
VGDDITCKLL SKNKKDVRIG SGWKKFCTRN GVRAGDLCCF KFTNIAERIV EVSIVF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.37871e-123pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0288879.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-