PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0279669.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 207aa MW: 24088.2 Da PI: 7.4319 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.1 | 7.2e-19 | 27 | 80 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t eql+ Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k Lj0g3v0279669.1 27 KKKRLTCEQLDSLESSFQQEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK 80 5667999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.3 | 1e-38 | 26 | 117 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+ eq+ +LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrRAR+ktkqlE+ y++Lk+++da+++e+++Le+ev +L+ l+ Lj0g3v0279669.1 26 EKKKRLTCEQLDSLESSFQQEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQEFDAIAKEKHKLEEEVMKLKGMLR 117 69*************************************************************************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-19 | 15 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.054 | 22 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-16 | 25 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.34E-15 | 27 | 83 | No hit | No description |
Pfam | PF00046 | 4.1E-16 | 27 | 80 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-21 | 29 | 89 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.1E-5 | 53 | 62 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 57 | 80 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-5 | 62 | 78 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.7E-9 | 82 | 116 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MEVKQQALSM ETPPAMEKLN YGGNQEKKKR LTCEQLDSLE SSFQQEIKLD PDRKMKLSKE 60 LGLQPRQIAV WFQNRRARWK TKQLEHLYDT LKQEFDAIAK EKHKLEEEVM KLKGMLREQG 120 CRTQQVSAGY TTEVSAEETV ESTSELALRC SKIHHHHHHH HQIHQQQQNT ANADQGNCSL 180 THTHSHMAED CSTVPVMSYW PGLPYYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 82 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0279669.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025980710.1 | 3e-95 | putative homeobox-leucine zipper protein ATHB-51 isoform X2 | ||||
Swissprot | Q9LZR0 | 5e-49 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A445HG20 | 6e-94 | A0A445HG20_GLYSO; Putative homeobox-leucine zipper protein ATHB-51 isoform B | ||||
STRING | GLYMA13G21330.1 | 3e-94 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-48 | homeobox 51 |
Publications ? help Back to Top | |||
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