PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0278949.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HB-other | ||||||||
Protein Properties | Length: 144aa MW: 16639.9 Da PI: 9.996 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7e-20 | 21 | 79 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++p+ +r++L +++ +++ +q+kvWFqNrR +ek+ Lj0g3v0278949.2 21 KYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 79 5679*****************************************************97 PP | |||||||
2 | bZIP_1 | 21.8 | 4.1e-07 | 73 | 116 | 18 | 61 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 rr+R++ ++e +L+ +L+a Nk L +e+++l+k+v++l Lj0g3v0278949.2 73 RRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVY 116 9***************************************9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-20 | 4 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.516 | 16 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-15 | 18 | 84 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.38E-18 | 20 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.08E-14 | 21 | 81 | No hit | No description |
Pfam | PF00046 | 2.0E-17 | 21 | 79 | IPR001356 | Homeobox domain |
CDD | cd14686 | 6.38E-4 | 73 | 112 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.1E-4 | 77 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MMAVSSGSSR DGSKVAMDNG KYVRYTPEQV EALERLYHEC PKPTSLRRQQ LIRECPILSH 60 IEPKQIKVWF QNRRCREKQR KESSRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVYENGF 120 FRQQTQNATL ATTDTSCDSG VTSG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0278949.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020217689.1 | 3e-87 | homeobox-leucine zipper protein ATHB-8 | ||||
Swissprot | Q9ZU11 | 4e-75 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A072V3X8 | 9e-87 | A0A072V3X8_MEDTR; Class III homeodomain leucine zipper protein | ||||
TrEMBL | A0A072VD23 | 4e-86 | A0A072VD23_MEDTR; Class III homeodomain leucine zipper protein | ||||
TrEMBL | A0A2K3PB51 | 1e-87 | A0A2K3PB51_TRIPR; Homeobox-leucine zipper protein ATHB-15-like | ||||
STRING | XP_009378434.1 | 8e-86 | (Pyrus x bretschneideri) | ||||
STRING | AES73881 | 2e-85 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.3 | 7e-78 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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