PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0278949.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 304aa    MW: 33880 Da    PI: 8.388
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0278949.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.43e-192179357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  Lj0g3v0278949.1 21 KYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 79
                     5679*****************************************************97 PP
2bZIP_1201.5e-06731161861
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                      rr+R++ ++e  +L+    +L+a Nk L +e+++l+k+v++l  
  Lj0g3v0278949.1  73 RRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVY 116
                      9***************************************9965 PP
3START94.22.6e-301652912126
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++a  v+e+l+d++ W ++++ +++l+v s+g  g+++l
  Lj0g3v0278949.1 165 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPA-RVAEILKDRLSWFRDCRTVDVLNVMSTGngGTIEL 257
                      7899******************************************************.9999999999************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEE CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwviv 126
                       +++l+a+++l+p Rdf+ +Ry+  +++g++v++
  Lj0g3v0278949.1 258 LYMQLYAPTTLAPgRDFWLLRYTSLMEDGSLVVC 291
                      ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-19579IPR009057Homeodomain-like
PROSITE profilePS5007115.5161680IPR001356Homeobox domain
SMARTSM003891.7E-151884IPR001356Homeobox domain
SuperFamilySSF466891.63E-172082IPR009057Homeodomain-like
CDDcd000862.96E-162181No hitNo description
PfamPF000468.7E-172279IPR001356Homeobox domain
CDDcd146864.53E-673112No hitNo description
PROSITE profilePS5084812.572155291IPR002913START domain
SuperFamilySSF559615.49E-19156292No hitNo description
Gene3DG3DSA:3.30.530.208.1E-9164291IPR023393START-like domain
PfamPF018523.4E-27165291IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MMAVSSGSSR DGSKVAMDNG KYVRYTPEQV EALERLYHEC PKPTSLRRQQ LIRECPILSH  60
IEPKQIKVWF QNRRCREKQR KESSRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVYENGF  120
FRQQTQNATL ATTDTSCDSG VTSGQRHLTP QNPPRDASPA GLLSIAEETL AEFLSKATGT  180
AVEWVQMPGM KPGPDSIGIV AISHGCPGVA ARACGLVGLE PARVAEILKD RLSWFRDCRT  240
VDVLNVMSTG NGGTIELLYM QLYAPTTLAP GRDFWLLRYT SLMEDGSLVV CILIEVLTFS  300
FILA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0278949.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027904125.10.0homeobox-leucine zipper protein ATHB-8
SwissprotQ9ZU111e-175ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A4D6NUW10.0A0A4D6NUW1_VIGUN; Homeobox-leucine zipper protein
STRINGXP_007137231.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1957355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.31e-178HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]