PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj0g3v0277059.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 595aa MW: 66635.5 Da PI: 10.6178 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.8 | 7.2e-17 | 115 | 201 | 9 | 99 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ + g + lp +f+ +h +++k+++ + ++gr+W+ + ++k++ + l++ W+ Fv +n+Lk+gD+++F+l+ +++ ++ v++fr+ Lj0g3v0277059.2 115 SYIR-GYMNLPPEFCLRHlDLSKPQG--VFNLLLNGRVWTAGYVIWKTK--IALSSRWRAFVTDNKLKVGDVCTFELIAKTNNTFQVHIFRE 201 4444.4599*********98887776..6666688********999999..67*************************9899999*****97 PP | |||||||
2 | B3 | 62.4 | 7.2e-20 | 294 | 387 | 8 | 99 |
-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ +g+l lp +f+ +h ++ k+++ + le ++g + +vk+ + +++++++vl++GWk Fvk+n+Lk+gD++ F+l+ +++ ++ v++fr Lj0g3v0277059.2 294 PSYIIHGQLNLPSNFCLRHlDLRKPRG-FINLEMLNGTVSTVKYLIkkSNTQKKIVLGRGWKAFVKDNNLKVGDVCSFELIAKTCNTFQVHIFR 386 45556788************7777777.79**************7744555555***************************9999999*****9 PP S CS B3 99 k 99 + Lj0g3v0277059.2 387 E 387 7 PP | |||||||
3 | B3 | 69.8 | 3.5e-22 | 476 | 574 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +++++ + ++g + lp +f+ +h +++k+++ ++ l +gr+W+vk+ +rk+++r ++ ++GW+ Fvk+n+Lk+gD+++F+l+ +++ +++ Lj0g3v0277059.2 476 IFMRPTYVTRGEMNLPARFCLQHlDLSKPKG-DINLGVVNGRVWTVKYLIRKSKRRvkiVLPSRGWRVFVKDNNLKVGDVCTFELIVSTNNTFL 568 456666777788************8888887.9***************999999998855556**********************97788889* PP EEEE-S CS B3 94 vkvfrk 99 v++fr+ Lj0g3v0277059.2 569 VHIFRE 574 ****97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.3E-23 | 99 | 202 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-22 | 102 | 201 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.84E-21 | 106 | 200 | No hit | No description |
PROSITE profile | PS50863 | 11.632 | 106 | 202 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-12 | 108 | 202 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-15 | 112 | 201 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-21 | 280 | 388 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-20 | 282 | 387 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.547 | 287 | 388 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.35E-21 | 288 | 386 | No hit | No description |
SMART | SM01019 | 1.2E-15 | 288 | 388 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-18 | 291 | 387 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.2E-23 | 465 | 575 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-22 | 467 | 574 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.95E-24 | 472 | 573 | No hit | No description |
PROSITE profile | PS50863 | 13.38 | 473 | 575 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-19 | 474 | 575 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.4E-21 | 476 | 574 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 595 aa Download sequence Send to blast |
MNALEINYPV KTVECKRASD AKGKKPANNE NSEDYKEGRK RKANLSLEVL QPCKMETGGC 60 VKAGSAFKFR KTASPHTDKM CKGKQVITAK QVTALERASS FKICNPSFLI FMHPSYIRGY 120 MNLPPEFCLR HLDLSKPQGV FNLLLNGRVW TAGYVIWKTK IALSSRWRAF VTDNKLKVGD 180 VCTFELIAKT NNTFQVHIFR ESDNASCSTS QVSDLRAGQK REANLLSESL RPCKVGRSRC 240 ARVGNSLKLQ KGASSSTDKK CLGKEGITAK QVTALDRARS FKICNPSVLI FMYPSYIIHG 300 QLNLPSNFCL RHLDLRKPRG FINLEMLNGT VSTVKYLIKK SNTQKKIVLG RGWKAFVKDN 360 NLKVGDVCSF ELIAKTCNTF QVHIFRESDN ANCPTSQVSD IRGGIKRKAN LSSESLQPCK 420 VGRSRCAKVG NSLKLKKGAS FSTDKRCQGK QVIAAKQVTA LDRASSFKTC NPSFLIFMRP 480 TYVTRGEMNL PARFCLQHLD LSKPKGDINL GVVNGRVWTV KYLIRKSKRR VKIVLPSRGW 540 RVFVKDNNLK VGDVCTFELI VSTNNTFLVH IFRESDNANS PTSQESVKVE ELVKD |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 23 | 39 | KKPANNENSEDYKEGRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj0g3v0277059.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | GLYMA18G30790.1 | 2e-55 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24690.1 | 2e-15 | B3 family protein |