PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0274859.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 331aa    MW: 36161.2 Da    PI: 8.7534
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0274859.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.53.1e-24147203259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       DgynWrKYGqK+vk+   +rsYYrCt++ C++kk ve +++ ++v ei+Y+++H h+
  Lj0g3v0274859.1 147 TDGYNWRKYGQKQVKSPIGSRSYYRCTHSACCAKK-VEFCDHSGHVSEIVYKSQHSHD 203
                      7********************************98.*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.752141205IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-20143205IPR003657WRKY domain
SuperFamilySSF1182904.71E-20144205IPR003657WRKY domain
SMARTSM007743.1E-23146204IPR003657WRKY domain
PfamPF031067.4E-17148203IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-6303331IPR003657WRKY domain
PROSITE profilePS508118.949313331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAETATPRLT HSPPPPPSTE LRTSSPPDEA QPNLETLATP SSPPRHHTDH LQGSSTAPEN  60
GKDETEAPAR PPGNEIIVKD AVEEPQVETK NQLQACSTPL SAPSPMVPEQ RLSPPKATSV  120
YVLEVDKTTP SSGTTFSSVP VARSSATDGY NWRKYGQKQV KSPIGSRSYY RCTHSACCAK  180
KVEFCDHSGH VSEIVYKSQH SHDPPHKTNP AKESKSLASK EPNVENTVPK QSVKVLNDSD  240
PSPSPKNPLQ EAPRNPDKKR QNSSDSGNGK VTFKEEDINE PELKRRMKKD DSTCLDSPIK  300
SGKKQKFVVH AAGDVGISGD GYRWRKYGQK M
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.46540.0cell culture| floral bud| flower| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0274859.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102990.0AP010299.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT02F19, TM1353, complete sequence.
GenBankAP0103000.0AP010300.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjB04H20, BM2019, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304613.21e-132probable WRKY transcription factor 32
RefseqXP_028223005.11e-132probable WRKY transcription factor 32
TrEMBLA0A371GEC71e-135A0A371GEC7_MUCPR; Putative WRKY transcription factor 32
STRINGGLYMA06G27440.31e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.12e-56WRKY DNA-binding protein 32