PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0274819.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | SBP | ||||||||
Protein Properties | Length: 206aa MW: 22364.2 Da PI: 10.6338 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.6 | 2.7e-41 | 72 | 148 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+ Lj0g3v0274819.3 72 CLVDGCSSDLSNCRDYHRRHKVCELHSKTPEVTIGGMKQRFCQQCSRFHSLDQFDERKRSCRKRLDGHNRRRRKPQP 148 9*************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 31.599 | 69 | 146 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 5.6E-32 | 69 | 133 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.54E-39 | 70 | 151 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.0E-31 | 72 | 145 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MEDSSRIGVH RMKGVFSVDL KLGQVGNSST EPALPKSKDA AAAEVSKMGS SFPSGSSKRA 60 RAVNNATLTA FCLVDGCSSD LSNCRDYHRR HKVCELHSKT PEVTIGGMKQ RFCQQCSRFH 120 SLDQFDERKR SCRKRLDGHN RRRRKPQPEP LKGPGSFLSS YQGSQLLPFS SSTAMVNPGW 180 SGGLFTSNAG GRLSQPQPAP TSGAFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 71 | 145 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 144 | RKRSCRKRLDGHNRRRRK |
2 | 127 | 145 | RKRSCRKRLDGHNRRRRKP |
3 | 128 | 145 | KRSCRKRLDGHNRRRRKP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0274819.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027338408.1 | 1e-106 | squamosa promoter-binding-like protein 13A | ||||
Swissprot | B9DI20 | 9e-58 | SP13A_ARATH; Squamosa promoter-binding-like protein 13A | ||||
Swissprot | P0DI11 | 9e-58 | SP13B_ARATH; Squamosa promoter-binding-like protein 13B | ||||
TrEMBL | A0A371EDC3 | 1e-105 | A0A371EDC3_MUCPR; Squamosa promoter-binding-like protein 13B (Fragment) | ||||
STRING | GLYMA04G37391.1 | 1e-103 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 9e-60 | SBP family protein |
Publications ? help Back to Top | |||
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