PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0273719.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 357aa    MW: 41211.2 Da    PI: 7.371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0273719.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-181868255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g++vAeIrdp+++g   r +lg+f+ta eAak +++a+  ++g
  Lj0g3v0273719.1 18 HYRGVRQRP-WGKFVAEIRDPNKRG--SRLWLGTFDTAIEAAKVYDRAAFTFRG 68
                     7********.**********96655..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-301776IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-211877IPR016177DNA-binding domain
CDDcd000181.33E-301876No hitNo description
PROSITE profilePS5103223.4331876IPR001471AP2/ERF domain
PfamPF008472.9E-121868IPR001471AP2/ERF domain
SMARTSM003802.0E-351882IPR001471AP2/ERF domain
PRINTSPR003671.9E-91930IPR001471AP2/ERF domain
PRINTSPR003671.9E-94258IPR001471AP2/ERF domain
SMARTSM005122.0E-4208316IPR001232S-phase kinase-associated protein 1-like
Gene3DG3DSA:3.30.710.101.0E-17209341No hitNo description
PfamPF039311.6E-10210268IPR016073SKP1 component, POZ domain
SuperFamilySSF546953.02E-8210268IPR011333SKP1/BTB/POZ domain
SuperFamilySSF813827.59E-5291343IPR016072SKP1 component, dimerisation
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MANPDEDCAL YVEVAKRHYR GVRQRPWGKF VAEIRDPNKR GSRLWLGTFD TAIEAAKVYD  60
RAAFTFRGLE AVLNFPFEAG VVDRKHRPEE EAETRAAGKA EHGMLINEGE VLMYHHFNNL  120
CTSEHGRLLV KQSLVTCSSI AGVIDIKTCK TNFKDWFKQI WREPHNPREK HFDDFRTLMN  180
SPDFRIFCYN IYQSSKHVPL LLTPRVSQDT ISLRSSDKVV FEMNKMVAIS ESKLLKDVIE  240
CHPNEDEIPL PRVSSLILPE VISFCEKKLK FDQLFKSIAE ILKTVFIPYN AWVTRFVNNN  300
HSIFSHLHDA ANFLNIPSLF EFTSLFTGLE DRGENENKIQ ETSKWYSALS MLSTMGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-261777464ATERF1
3gcc_A1e-261777464ATERF1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.29900.0cell culture| pod| protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0273719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096450.0AP009645.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjB15M17, BM2010, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-33ethylene responsive element binding factor 5