PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0272799.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 490aa MW: 53033.1 Da PI: 4.7244 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.5 | 4.9e-32 | 293 | 350 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgs++prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k Lj0g3v0272799.2 293 EDGYNWRKYGQKQVKGSDYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 350 7****************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-28 | 289 | 351 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-26 | 291 | 351 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-35 | 292 | 350 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.8E-25 | 293 | 349 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.043 | 293 | 351 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MAGIDDNVAL TGDWGLHSPS PRTLFSRMLE EDNVTRSISE HPGSGRTGDL FPGTHDSSET 60 GRANMRESSQ DGNSGVQLTD PSFQTEQKSN SNSRGGLVER MAARAGFNAP RLNTESIRST 120 DLSLNSDIRS PYLTIPPGLS PTTLLDSPVF LANSLAQPSP TTGKFLFTSN GNIRCSELSS 180 DAPEKRKDNG FDDFYASSFA FKPTTDSGSS FYHDAGRKTN QTTLPQQSLP GIEASVQSRP 240 SFQSQSVDAV KVQTENKSGL EHSAPLEEQA DEEGDQRVNV DTVAAGVGGA PSEDGYNWRK 300 YGQKQVKGSD YPRSYYKCTH PNCQVKKKVE RSHEGHITEI IYKGAHNHPK PPPNRRSSGL 360 GSVNPHTDMQ VDNPEHVEPQ RVGEGDLGWA DAQKGNIAGA GNWKQDNLEV TSSASVGPEY 420 GNQSTNLQTQ NGTNLDSGEA VDGSSTFSNE EEEDDQGTHG SVSLGYDGEG DESESKRRYL 480 YYSASSFFES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-17 | 294 | 352 | 16 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0272799.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027333911.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 1e-106 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A445KGX3 | 0.0 | A0A445KGX3_GLYSO; Putative WRKY transcription factor 2 | ||||
TrEMBL | A0A4D6M2I7 | 0.0 | A0A4D6M2I7_VIGUN; WRKY transcription factor 33 | ||||
STRING | GLYMA06G47880.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-108 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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