PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0262869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 24260.1 Da PI: 6.2129 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.9 | 2.9e-37 | 7 | 103 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkCa+dCv+apyf +q + +fa+vhk++Gasnv++ll++lp + r+da+ ++ yeA ar++dP+yG+v++i +l+qq+++l++e Lj0g3v0262869.1 7 SCGACKFLRRKCASDCVFAPYFSYDQaATHFAAVHKVYGASNVSRLLSHLPIQSRSDAAITISYEALARMQDPIYGCVAHIYALHQQIASLQEE 100 6***********************99789****************************************************************9 PP DUF260 94 lal 96 ++ Lj0g3v0262869.1 101 IDN 103 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.79 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.9E-36 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MTGPGSSCGA CKFLRRKCAS DCVFAPYFSY DQAATHFAAV HKVYGASNVS RLLSHLPIQS 60 RSDAAITISY EALARMQDPI YGCVAHIYAL HQQIASLQEE IDNLLGSQIA NSFVSSVDCG 120 GVQVPVNLNS EIQYLLQHDH ATIRTPYHQN QLANFLSSQE GSASVVYQSV NSQMETELPP 180 NAHALQEPLF GDFNSNPFEK FLSGIDQEVF VHHPWFKHNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-33 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-33 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0262869.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027368497.1 | 1e-111 | LOB domain-containing protein 33-like | ||||
Swissprot | Q9LHS8 | 1e-54 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A371ED15 | 1e-114 | A0A371ED15_MUCPR; LOB domain-containing protein 33 (Fragment) | ||||
STRING | GLYMA02G41710.2 | 1e-111 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 5e-57 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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