PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0262429.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 535aa MW: 59396.1 Da PI: 6.3718 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65 | 1.1e-20 | 60 | 115 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Lj0g3v0262429.2 60 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 115 688999***********************************************999 PP | |||||||
2 | START | 215.9 | 1.4e-67 | 251 | 470 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la a++el+ +a+ ++p+W + +n+de++++f+++ + + ea+r+++vv+m+++ lve+l+d++ qW++ + +a+t+ Lj0g3v0262429.2 251 LAVVAMEELIGMAQMGDPLWLSTLdgsdAVLNEDEYIRSFPRGIGpkpsgLKCEASRETAVVIMNHVSLVEILMDVN-QWSTVFSaivsRAMTV 343 66779*******************9998899***********999********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 ev+s+g galq+m+ael ++splvp R+++fvRy++q+g+g+w++vdvS+d+ ++ p + R++++pSg+li++++ng+skvtwveh Lj0g3v0262429.2 344 EVLSTGvagnynGALQVMTAELHVPSPLVPtRESYFVRYCKQHGDGTWAVVDVSLDNLRPSP----STRSRRRPSGCLIQEMPNGYSKVTWVEH 433 ************************************************************99....59************************** PP EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v++++r +h+l+++lv+sg+a+gak+wvatl+rqce+ Lj0g3v0262429.2 434 VEVDDRGVHNLYKQLVGSGQAFGAKRWVATLDRQCER 470 ***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 40 | 115 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.34E-19 | 47 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.989 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-19 | 58 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.86E-19 | 60 | 118 | No hit | No description |
Pfam | PF00046 | 2.7E-18 | 60 | 115 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 2.2E-34 | 241 | 472 | No hit | No description |
PROSITE profile | PS50848 | 43.422 | 241 | 473 | IPR002913 | START domain |
CDD | cd08875 | 1.18E-129 | 245 | 469 | No hit | No description |
SMART | SM00234 | 6.5E-62 | 250 | 470 | IPR002913 | START domain |
Pfam | PF01852 | 8.1E-57 | 252 | 470 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.0E-6 | 345 | 437 | IPR023393 | START-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MMFQPNLMEA GQFHPLDMAP NTSESDIPRL REDEFDSATK SGSENHEGAS GEDQEPRAKK 60 KRYHRHTQHQ IQEMEAFFKE CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKTQHER 120 HENTSLRTEN EKLRADNMRY REALSNASCP NCGGPTAIGE MSFDEHHLRI ENARLREEIE 180 RISSIAAKYV GKPVVNYSHL SSPLPPRPLE LGVGGGFGSQ PGIGVDMYGG GDILRSITGP 240 TEADKPFIIE LAVVAMEELI GMAQMGDPLW LSTLDGSDAV LNEDEYIRSF PRGIGPKPSG 300 LKCEASRETA VVIMNHVSLV EILMDVNQWS TVFSAIVSRA MTVEVLSTGV AGNYNGALQV 360 MTAELHVPSP LVPTRESYFV RYCKQHGDGT WAVVDVSLDN LRPSPSTRSR RRPSGCLIQE 420 MPNGYSKVTW VEHVEVDDRG VHNLYKQLVG SGQAFGAKRW VATLDRQCER LASAMATNIP 480 TVDVGVITSQ EGRKSMMKLA ERMVISFCAG VSASTAHSWT TISGTGADDV RVTTR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.8670 | 0.0 | floral bud| flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0262429.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027346057.1 | 0.0 | homeobox-leucine zipper protein HDG2-like isoform X2 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A0S3SC10 | 0.0 | A0A0S3SC10_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132557.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Publications ? help Back to Top | |||
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