PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0260369.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 558aa    MW: 62572.1 Da    PI: 5.0501
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0260369.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.9e-12471513346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eEd +l  av+ +G  +W ++a+ +  +Rt+ qc +rw k
  Lj0g3v0260369.3 471 EWTEEEDAQLTSAVAFFGESDWQSVASVLE-RRTGTQCSNRWKK 513
                      7*****************************.***********98 PP
2Myb_DNA-binding28.14.8e-09520553136
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                      rg+++ eEd++l  av ++G + W++Ia++++ gR 
  Lj0g3v0260369.3 520 RGSFSLEEDKRLTVAVMLFGRK-WNLIAKYIP-GRI 553
                      899*****************99.*********.995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.017320412IPR001005SANT/Myb domain
PROSITE profilePS500905.25321408IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.4E-6323339IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-6383419IPR009057Homeodomain-like
SuperFamilySSF466898.41E-12392446IPR009057Homeodomain-like
PROSITE profilePS500908.955411463IPR017877Myb-like domain
SMARTSM007174.5E-5415465IPR001005SANT/Myb domain
CDDcd001677.50E-5418463No hitNo description
Gene3DG3DSA:1.10.10.601.3E-12420474IPR009057Homeodomain-like
PROSITE profilePS5129415.387464519IPR017930Myb domain
SuperFamilySSF466895.99E-20467552IPR009057Homeodomain-like
SMARTSM007177.9E-10468517IPR001005SANT/Myb domain
CDDcd001671.62E-11471515No hitNo description
PfamPF139211.3E-12472531No hitNo description
Gene3DG3DSA:1.10.10.601.4E-16475524IPR009057Homeodomain-like
PROSITE profilePS500905.924519552IPR017877Myb-like domain
SMARTSM007173.3519558IPR001005SANT/Myb domain
CDDcd001672.35E-4522552No hitNo description
Gene3DG3DSA:1.10.10.602.2E-8525554IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MSHSTANHDG ESLSATSSDD DEGLQEDMAA IARACMITGH DTAAADETPP EYDDDPLLAP  60
GDALVPLASD SDDERRNDIE CLKRVQSLYN PLPDHPLSPL PTVSDDDEEE NDAETLRAIY  120
KRFSNFERSD HEGGKENLAE GNQVLSRGSE GDIAGGSCYK SDAAELYPDN AAHLLTGHFG  180
NDFLDCLEPD DAGNSSQLPQ KIANFPPAAL ALIDAIKKNR AYQRFLRSKI IEMESKIEEN  240
EKIKNNIKLV KDFQISCNRR TGSALALKKD PRVQLISTKK SPAPNKSKNK KASPMCYGPE  300
ENPRVANYRM VLERFPLSID RKRWSNVERE NLSKGIKQQF QEMVLQTSLD RTSSDCSNDM  360
DSMMASVKDL EITPARMREF LPKVNWDQLA SMYVAGRSGA ECVSRWLNCE DPLINHAPWT  420
GEEDRSLLSI VQSRGIRNWV DISVSLATKR TPFQCLARYQ RSLNPSMLNS EWTEEEDAQL  480
TSAVAFFGES DWQSVASVLE RRTGTQCSNR WKKSLCPVRR GSFSLEEDKR LTVAVMLFGR  540
KWNLIAKYIP GRIQKFSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-223855557155MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-223855557155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0260369.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512739.10.0uncharacterized protein LOC101490682 isoform X1
RefseqXP_004512740.10.0uncharacterized protein LOC101490682 isoform X2
TrEMBLA0A1S2Z0890.0A0A1S2Z089_CICAR; uncharacterized protein LOC101490682 isoform X2
TrEMBLA0A1S2Z0930.0A0A1S2Z093_CICAR; uncharacterized protein LOC101490682 isoform X1
STRINGXP_004512739.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-135myb domain protein 4r1