PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0260369.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 559aa    MW: 62700.2 Da    PI: 5.0501
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0260369.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.9e-12472514346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eEd +l  av+ +G  +W ++a+ +  +Rt+ qc +rw k
  Lj0g3v0260369.2 472 EWTEEEDAQLTSAVAFFGESDWQSVASVLE-RRTGTQCSNRWKK 514
                      7*****************************.***********98 PP
2Myb_DNA-binding28.14.8e-09521554136
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                      rg+++ eEd++l  av ++G + W++Ia++++ gR 
  Lj0g3v0260369.2 521 RGSFSLEEDKRLTVAVMLFGRK-WNLIAKYIP-GRI 554
                      899*****************99.*********.995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.017321413IPR001005SANT/Myb domain
PROSITE profilePS500905.25322409IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.4E-6324340IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-6384420IPR009057Homeodomain-like
SuperFamilySSF466898.41E-12393447IPR009057Homeodomain-like
PROSITE profilePS500908.955412464IPR017877Myb-like domain
SMARTSM007174.5E-5416466IPR001005SANT/Myb domain
CDDcd001677.52E-5419464No hitNo description
Gene3DG3DSA:1.10.10.601.3E-12421475IPR009057Homeodomain-like
PROSITE profilePS5129415.387465520IPR017930Myb domain
SuperFamilySSF466895.99E-20468553IPR009057Homeodomain-like
SMARTSM007177.9E-10469518IPR001005SANT/Myb domain
CDDcd001671.62E-11472516No hitNo description
PfamPF139211.3E-12473532No hitNo description
Gene3DG3DSA:1.10.10.601.4E-16476525IPR009057Homeodomain-like
SMARTSM007173.3520559IPR001005SANT/Myb domain
PROSITE profilePS500905.924520553IPR017877Myb-like domain
CDDcd001672.36E-4523553No hitNo description
Gene3DG3DSA:1.10.10.602.2E-8526555IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MSHSTANHDG ESLSATSSDD DEGLQEDMAA IARACMITGH DTAAADETPP EYDDDPLLAP  60
GDALVPLASD SDDERRNDIE CLKRVQSLYN PLPDHPLSPL PTVSDDDEEE NDAETLRAIY  120
KRFSNFERSD HEGGKENLAE GNQVLSRGSE GDIAGGSCYK SDAAELYPDN AAHLLTGHFG  180
NDFLDCLEPD DAGNSSQLPQ KIANFPPAAL ALIDAIKKNR AYQRFLRSKI IEMESKIEEN  240
EKIKNNIKLV KDFQISCNRR TGSALALKKD PRVQLISTKK SPAPNKSKQN KKASPMCYGP  300
EENPRVANYR MVLERFPLSI DRKRWSNVER ENLSKGIKQQ FQEMVLQTSL DRTSSDCSND  360
MDSMMASVKD LEITPARMRE FLPKVNWDQL ASMYVAGRSG AECVSRWLNC EDPLINHAPW  420
TGEEDRSLLS IVQSRGIRNW VDISVSLATK RTPFQCLARY QRSLNPSMLN SEWTEEEDAQ  480
LTSAVAFFGE SDWQSVASVL ERRTGTQCSN RWKKSLCPVR RGSFSLEEDK RLTVAVMLFG  540
RKWNLIAKYI PGRIQKFSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-223865567155MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-223865567155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0260369.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512740.10.0uncharacterized protein LOC101490682 isoform X2
TrEMBLA0A1S2Z0890.0A0A1S2Z089_CICAR; uncharacterized protein LOC101490682 isoform X2
STRINGXP_004512739.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-142myb domain protein 4r1