PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0260369.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 558aa MW: 62572.1 Da PI: 5.0501 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39 | 1.9e-12 | 471 | 513 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd +l av+ +G +W ++a+ + +Rt+ qc +rw k Lj0g3v0260369.1 471 EWTEEEDAQLTSAVAFFGESDWQSVASVLE-RRTGTQCSNRWKK 513 7*****************************.***********98 PP | |||||||
2 | Myb_DNA-binding | 28.1 | 4.8e-09 | 520 | 553 | 1 | 36 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 rg+++ eEd++l av ++G + W++Ia++++ gR Lj0g3v0260369.1 520 RGSFSLEEDKRLTVAVMLFGRK-WNLIAKYIP-GRI 553 899*****************99.*********.995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.017 | 320 | 412 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.25 | 321 | 408 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-6 | 323 | 339 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.4E-6 | 383 | 419 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.41E-12 | 392 | 446 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.955 | 411 | 463 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.5E-5 | 415 | 465 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.50E-5 | 418 | 463 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-12 | 420 | 474 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.387 | 464 | 519 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-20 | 467 | 552 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-10 | 468 | 517 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.62E-11 | 471 | 515 | No hit | No description |
Pfam | PF13921 | 1.3E-12 | 472 | 531 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-16 | 475 | 524 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.924 | 519 | 552 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.3 | 519 | 558 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.35E-4 | 522 | 552 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-8 | 525 | 554 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MSHSTANHDG ESLSATSSDD DEGLQEDMAA IARACMITGH DTAAADETPP EYDDDPLLAP 60 GDALVPLASD SDDERRNDIE CLKRVQSLYN PLPDHPLSPL PTVSDDDEEE NDAETLRAIY 120 KRFSNFERSD HEGGKENLAE GNQVLSRGSE GDIAGGSCYK SDAAELYPDN AAHLLTGHFG 180 NDFLDCLEPD DAGNSSQLPQ KIANFPPAAL ALIDAIKKNR AYQRFLRSKI IEMESKIEEN 240 EKIKNNIKLV KDFQISCNRR TGSALALKKD PRVQLISTKK SPAPNKSKNK KASPMCYGPE 300 ENPRVANYRM VLERFPLSID RKRWSNVERE NLSKGIKQQF QEMVLQTSLD RTSSDCSNDM 360 DSMMASVKDL EITPARMREF LPKVNWDQLA SMYVAGRSGA ECVSRWLNCE DPLINHAPWT 420 GEEDRSLLSI VQSRGIRNWV DISVSLATKR TPFQCLARYQ RSLNPSMLNS EWTEEEDAQL 480 TSAVAFFGES DWQSVASVLE RRTGTQCSNR WKKSLCPVRR GSFSLEEDKR LTVAVMLFGR 540 KWNLIAKYIP GRIQKFSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-22 | 385 | 555 | 7 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-22 | 385 | 555 | 7 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0260369.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004512739.1 | 0.0 | uncharacterized protein LOC101490682 isoform X1 | ||||
Refseq | XP_004512740.1 | 0.0 | uncharacterized protein LOC101490682 isoform X2 | ||||
TrEMBL | A0A1S2Z089 | 0.0 | A0A1S2Z089_CICAR; uncharacterized protein LOC101490682 isoform X2 | ||||
TrEMBL | A0A1S2Z093 | 0.0 | A0A1S2Z093_CICAR; uncharacterized protein LOC101490682 isoform X1 | ||||
STRING | XP_004512739.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-135 | myb domain protein 4r1 |