PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0258549.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SRS
Protein Properties Length: 327aa    MW: 34670.5 Da    PI: 8.0258
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0258549.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702180.38.1e-561262866153
           DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskk 98 
                        CqdCGn+akkdC+++RCRtCCk rgfdC+thv+stW+p ++rrer++ +   s  ++    a++ +kr+r+++++  ++++s++ ++a  ++
  Lj0g3v0258549.1 126 RVCQDCGNRAKKDCSYKRCRTCCKGRGFDCNTHVRSTWIPLSHRRERHAVADGGSGGDSDGGgASSGAKRPRSSQNAGGATSHSSTATNAAMSR 219
                      57*********************************************88887776655544458888999999855554444444444444444 PP

           DUF702  99 eletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                      +l+  +            lP +++++a f+c+rvs++ +ge+e+aY ++v i+GhvfkG+LydqG++
  Lj0g3v0258549.1 220 NLSLDTaschqdagfkqcLPGNIRAPAEFKCLRVSGIGNGEDEFAYMATVRISGHVFKGFLYDQGVS 286
                      4333334599999****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016235.3E-25127169IPR006510Zinc finger, lateral root primordium type 1
PfamPF051422.4E-53127285IPR007818Protein of unknown function DUF702
Gene3DG3DSA:2.30.27.108.2E-5155212No hitNo description
TIGRFAMsTIGR016245.1E-24238285IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSMLGFRDLV FIAPNPSQAQ PFSADHHANL PLPSSSSSAA LSVGLGIFPL LTATPCMPQP  60
QPQPQPQSNT NDNVHNHNQD CGNGNNNPSF WNLKMCPPQL NSSDRKAAMI INVEEENGGV  120
YGSDYRVCQD CGNRAKKDCS YKRCRTCCKG RGFDCNTHVR STWIPLSHRR ERHAVADGGS  180
GGDSDGGGAS SGAKRPRSSQ NAGGATSHSS TATNAAMSRN LSLDTASCHQ DAGFKQCLPG  240
NIRAPAEFKC LRVSGIGNGE DEFAYMATVR ISGHVFKGFL YDQGVSGRNE MPCVSELQLG  300
NNGSGKSNRE CASPIGVPTS VFPASAC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.219720.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0258549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356844.11e-121protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLG7LG161e-117G7LG16_MEDTR; LRP1 carboxy-terminal domain protein
STRINGAET023211e-118(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-50Lateral root primordium (LRP) protein-related