PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0256559.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 336aa    MW: 38186.9 Da    PI: 7.9174
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0256559.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.1e-10282329246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                      +rW + E e l+ +v+++G g+W+ I +t     kgRt  ++k++w++
  Lj0g3v0256559.1 282 KRWCQLEKETLLAGVNKFGEGNWTFILSTHKdvfKGRTSVDLKDKWRN 329
                      699999*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-11273330IPR009057Homeodomain-like
PROSITE profilePS5129410.045276336IPR017930Myb domain
SuperFamilySSF466892.96E-13278331IPR009057Homeodomain-like
CDDcd116605.27E-17282331No hitNo description
PfamPF002496.7E-6282330IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDGDAGSWAV EFIRGRIPNS TILRVLVRTL AVAPKMDSSY FKTMILGMLQ ECCWSVSIEE  60
YMLEIMEILE RSLDHEGSPI SAAFRAAYCT VAVECTLKYL EVDLSSPKYI DAVQRIWSGR  120
VRQMRPSSGG ESQCPLFSEE LERWMTEIEA SLIDTCIRDR LAALKNTRVV AIQKLKIFLA  180
ESWDNFDPSF LEQLAGENDV FLSNVAKGWC LPPQGQKEQQ KETANVGDRS PTTADEWKKF  240
VNRSCSGTSY GTLLPSPKMK KVSPLKEYDD STNVIKKRRI TKRWCQLEKE TLLAGVNKFG  300
EGNWTFILST HKDVFKGRTS VDLKDKWRNM NLHTGI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.4760.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0256559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1344881e-146BT134488.1 Lotus japonicus clone JCVI-FLLj-19D18 unknown mRNA.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-16TRF-like 5