PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0256519.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 289aa    MW: 32587.8 Da    PI: 8.0296
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0256519.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.33e-18217258242
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-S CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversa 42 
                       Dg++WrKYGqK+ kg+++pr+YYrC++   Cpv+k+v +++
  Lj0g3v0256519.1 217 GDGCQWRKYGQKTAKGNPCPRAYYRCSMGtACPVRKQVHQQT 258
                      69**************************98********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-19201258IPR003657WRKY domain
SuperFamilySSF1182902.09E-16209258IPR003657WRKY domain
PROSITE profilePS5081119.703211259IPR003657WRKY domain
SMARTSM007743.5E-14216266IPR003657WRKY domain
PfamPF031061.9E-16218258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEEKVAIKKL LEFAERPSSD NTDHAPNMTQ EPSFQNNTMG STFLSLSLIN NSSEQLPHQI  60
QGEPLSQMGM LRVKLEEAKK ENESLKAMLV QVNEHHTVLQ NRLLLAMQHH QSSMLPRNNH  120
DLLKGNRQDD EEKAVLPTRQ FLNIGEASSS DHGSKTEGFA SAEKIEKSRN IACDVEGETN  180
SQITSQETKS IDEPQTSEIT RKARVSIRAR SDFSLMGDGC QWRKYGQKTA KGNPCPRAYY  240
RCSMGTACPV RKQVHQQTSI YNSCCPCYHY RLITLLTHFI VTGAKMFQG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0256519.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434640.0BT143464.1 Lotus japonicus clone JCVI-FLLj-21J12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488182.12e-90WRKY transcription factor 42-like isoform X1
RefseqXP_028202627.14e-90WRKY transcription factor 42-like
TrEMBLA0A371E5Y52e-98A0A371E5Y5_MUCPR; WRKY transcription factor 42 (Fragment)
STRINGXP_004488182.17e-90(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-35WRKY family protein