PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0254589.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 282aa    MW: 30979.2 Da    PI: 6.1715
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0254589.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.62e-31136193259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+v rs+edp++v++tYeg+H h+
  Lj0g3v0254589.1 136 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVGRSSEDPTTVITTYEGQHCHH 193
                      8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-32120194IPR003657WRKY domain
SuperFamilySSF1182904.58E-27127193IPR003657WRKY domain
PROSITE profilePS5081128.828130195IPR003657WRKY domain
SMARTSM007741.8E-35135194IPR003657WRKY domain
PfamPF031061.1E-24136193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDDKDKPPPD PSTAAEFASW MLCADDSDFF SGDRERSILG DFGWNLEPDR ISAADDGLWL  60
PPHAAPSGSI EIKPTASASI NQSVSSSSSE DPPEKSTVSD EKPIEIPSSK SKKKGQKRIR  120
QPRFAFMTKS EVDHLEDGYR WRKYGQKAVK NSPFPRSYYR CTNSKCTVKK RVGRSSEDPT  180
TVITTYEGQH CHHTVGFPRG GFINHEAAFT SGQLGPPMSR FYYPIQLSRE NTSSSISQPS  240
QAHDEAGGSS TMMSADDDAS PQPPTDEGLL GDIVPPGMRN RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-25125192774Probable WRKY transcription factor 4
2lex_A8e-25125192774Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.140300.0cell culture| pod| protoplast
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0254589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360869.11e-139probable WRKY transcription factor 57
RefseqXP_027360870.11e-139probable WRKY transcription factor 57
RefseqXP_027360872.11e-139probable WRKY transcription factor 57
SwissprotQ9C9831e-74WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLA0A371FJW21e-141A0A371FJW2_MUCPR; Putative WRKY transcription factor 57
STRINGGLYMA02G12830.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108143140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-64WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]