PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0249079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | FAR1 | ||||||||
Protein Properties | Length: 255aa MW: 28853 Da PI: 9.9162 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.1 | 1.6e-09 | 3 | 44 | 50 | 90 |
FAR1 50 kerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 k r++ +++rt+Cka+l+v+k + +++w + +++++HnH ++ Lj0g3v0249079.1 3 KVRKRCSTSRTDCKASLVVSKARkRHNWAIVSFNNDHNHIMV 44 456777899***********99989**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.1E-7 | 3 | 44 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MKKVRKRCST SRTDCKASLV VSKARKRHNW AIVSFNNDHN HIMVSPKSVK YLRCHKEGMS 60 VAAKNLVEKF HQDGLPTGKV ATMFNNGSSS FSKRDCWNHL RNVRSRKLEV GDANKNVGFV 120 GGETNLVSER DDLATLRGMH VHRLLMSLAD LAAKSEKIDK FISSQLEEIY KKASMMVSEM 180 QSSKDILLSE TSCQGFIMDE QVNEEPELNI KDPIMSQTRR TKSSLELSMN RPSVNKDHAK 240 YVENMDTIDE VASKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0249079.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3L1D4 | 7e-46 | A0A2K3L1D4_TRIPR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15798 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-11 | FAR1-related sequence 5 |