PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0246909.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 459aa    MW: 51951 Da    PI: 7.016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0246909.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16142187147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Lj0g3v0246909.1 142 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 187
                      899*****************************.***********996 PP
2Myb_DNA-binding55.41.4e-17194237146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Lj0g3v0246909.1 194 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 237
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575123No hitNo description
PROSITE profilePS5129417.17137188IPR017930Myb domain
SMARTSM007172.9E-14141190IPR001005SANT/Myb domain
SuperFamilySSF466898.99E-28142235IPR009057Homeodomain-like
PfamPF002499.8E-16142187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-25143195IPR009057Homeodomain-like
CDDcd001676.68E-13145186No hitNo description
PROSITE profilePS5129426.929189243IPR017930Myb domain
SMARTSM007171.8E-14193241IPR001005SANT/Myb domain
PfamPF002492.7E-14194236IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-20196242IPR009057Homeodomain-like
CDDcd001671.95E-11196236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MASKCYTISS QENQNGYPFS SSCSTSSFPS PSMGMVYADM VSLSLNSNFS NVSSSQESNH  60
ACKGSGLETG STNWTFPFMR ECLPRSFEEE NPNMDDVEAK SSDCSDEAGE TNHNADFNEE  120
NPNENPSICK EGDSGQSKLC ARGHWRPAED SKLKELVALY GPQNWNLIAE KLEGRSGKSC  180
RLRWFNQLDP RINRRAFSEE EEERLMQAHR IYGNKWAMIA RLFPGRTDNA VKNHWHVIMA  240
RKYREQSNAY RRRRLNNQSV HKRTTDHQQN QTLACRSDST TELTEHHASS HYLLNGSVLN  300
NNNMAVELTT HMSGSGSRNQ APPHVGFYAQ QSPFDFFSGD RSNIDMVGKS ISHIRSWDST  360
GDEFHNHHHH QQHYQHHQQH HQVSGFYPHY PQQYLMGTQQ PNNHKFYCLS SSSSSASTTT  420
RTTLPHVSFA EKTGKVLMTD PSDAVPPPPF FDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-321422427107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254YRRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0246909.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-77AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362789.11e-157transcription factor MYB108-like
TrEMBLV7CJS21e-154V7CJS2_PHAVU; Uncharacterized protein
STRINGXP_007157609.11e-154(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-75myb domain protein 105