PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0246749.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 348aa    MW: 37772.4 Da    PI: 8.7593
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0246749.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.86.6e-403595262
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     +e+ lkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++
  Lj0g3v0246749.1 35 PEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVK 95
                     67899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-272993IPR003851Zinc finger, Dof-type
PfamPF027014.6E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4323993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSPEDTSPAK PAKDSDNNQG SGNGGRKASS TARPPEQGLK CPRCDSPNTK FCYYNNYSLT  60
QPRHFCKTCR RYWTKGGALR NVPIGGGCRK NKKVKSSRLS TDSKDSGSSS DHIGGGLKFL  120
HSLSPSMDFQ LGGMPLPFPR LQHHPPIYNQ FSSYLGDSSA PASSGFNLDP SNSLASLNYP  180
FSTATGNGYT GAIQGMSALS VSNTLASNIE SLSSMNQDLH WKLQQQRLSM MFSGENQKEN  240
NSVVTPVNTL ENQNQNQRLQ PILFQNLELS RTETDFSIGN SRKEGQNGDT PTEWFFGNYN  300
NAASVTPTPT TTSSGGGAGH DNVGNWSNGV HAWGDVQQQQ QQQYNGLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0246749.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359976.11e-143dof zinc finger protein DOF5.7
TrEMBLV7CM551e-133V7CM55_PHAVU; Uncharacterized protein
STRINGXP_007158346.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.19e-58Dof family protein