PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0242739.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 347aa    MW: 38422 Da    PI: 7.4271
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0242739.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.2e-06115135526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C +f++ G C  Gd C FaHg
  Lj0g3v0242739.1 115 SCADFHK-GSCMKGDACEFAHG 135
                      69*****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.018110136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.432111137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4116137IPR000571Zinc finger, CCCH-type
SMARTSM0035614145168IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643145169IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MMLRANPTVH VPPWPMVNDP TTEIFSPLTA TNADYDHSPF YLQEALEQYA PSDADSDPGR  60
DSADVYSFDQ FRMFEFKVRN CARGRSHDWT ECPYAHPGEK ARRRDPRKYH YSGASCADFH  120
KGSCMKGDAC EFAHGVFECW LHPARYRTQP CKDGTSCRRR VCFFAHTPEQ LRVLPQHSPR  180
PRSVAFEFQS ACAKKLPASS SSSHGSVSPP AETATPPMSP VAQSLCSSSV GVSEMVASLC  240
NLQLGRVKSL PSSWNMQMGS PRFGSPRGPV IRPGFCSLPS TPTQVPPGRG SVNYFDLWDQ  300
RCEEEEPVME RVESGRGIRA KMFEKLSKEN SLDSSGSGQE DGAPNVG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.132910.0cell culture| protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0242739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341298.11e-173zinc finger CCCH domain-containing protein 20-like
SwissprotO821991e-107C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A1S2YE681e-167A0A1S2YE68_CICAR; zinc finger CCCH domain-containing protein 20
STRINGXP_004503514.11e-168(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.13e-99C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]