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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lj0g3v0240279.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family | WRKY | ||||||||
| Protein Properties | Length: 545aa MW: 58442.7 Da PI: 6.1955 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 95.7 | 3.2e-30 | 293 | 351 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+H+h+
Lj0g3v0240279.1 293 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHKHP 351
7***************************99****************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 1.5E-33 | 277 | 353 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 3.27E-27 | 285 | 353 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 29.425 | 287 | 353 | IPR003657 | WRKY domain |
| SMART | SM00774 | 5.1E-36 | 292 | 352 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 4.6E-26 | 294 | 351 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 545 aa Download sequence Send to blast |
MDNKVNNTAN NNNSTATIPF QVNLSSSDEK RPIIDEMDFF SDNKNNNNNK DHHDTLVGSA 60 STSAPHDHST NPALLEFKVN TGLNLLTTNT SSDQSMVEDD IPSNLEDKRA KMELVVLQAE 120 IERVKVENHR LRSMLEQVNT NYNELRVHLV SLMQGQKAGE EGGGDQQKQV FDGKLEGERK 180 QSGNGGGALV PRQFMDLGLA TNADVDEPSL SSSVGRSQEQ SKSPANNVEV GSDEDKKEFS 240 SAIIEREDSP PNQGLTANSV PRFSPPGNVD QAEATMRKAR VSVRARSEAS MLTDGCQWRK 300 YGQKMAKGNP CPRAYYRCTM AAGCPVRKQV QRCAEDRTIL ITTYEGNHKH PLPPAAMAMA 360 QTTSSAARML LSGSMSSADG LMNANFLTRT LLPCSSSMAT ISASAPFPTV TLDLTHSPNP 420 LQFPKNPTQF QIPFPGIPQN LANSPASLLP QIFGYNQSKF SGLQMSQNAS SDPSQSQPPP 480 PPHLADTISA ASAAIAADPN FTAALAAAIT SIIGGAAQPN TNNSANNNGN TNVTSSNSNN 540 SNGKQ |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 2ayd_A | 2e-22 | 279 | 355 | 1 | 76 | WRKY transcription factor 1 |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Lj0g3v0240279.1 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | EU019575 | 0.0 | EU019575.1 Glycine max WRKY36 (WRKY36) mRNA, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020238224.1 | 0.0 | probable WRKY transcription factor 31 isoform X1 | ||||
| Refseq | XP_020238225.1 | 0.0 | probable WRKY transcription factor 31 isoform X2 | ||||
| Swissprot | Q9C519 | 1e-128 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
| TrEMBL | A0A0L9UMQ0 | 0.0 | A0A0L9UMQ0_PHAAN; Uncharacterized protein | ||||
| TrEMBL | V7BZA4 | 0.0 | V7BZA4_PHAVU; Uncharacterized protein | ||||
| STRING | XP_007149982.1 | 0.0 | (Phaseolus vulgaris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF866 | 34 | 121 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G62300.1 | 1e-105 | WRKY family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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