PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0239739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bZIP | ||||||||
Protein Properties | Length: 224aa MW: 25585 Da PI: 6.532 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.2 | 6.3e-12 | 64 | 94 | 4 | 34 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k +rr+++NReAAr+sR+RKka++++Le Lj0g3v0239739.1 64 DKIQRRLAQNREAARKSRLRKKAYVQQLESS 94 6889************************974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-4 | 61 | 126 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.783 | 63 | 105 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.7E-9 | 65 | 98 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 2.17E-23 | 65 | 117 | No hit | No description |
SuperFamily | SSF57959 | 2.65E-7 | 65 | 104 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.0E-8 | 66 | 107 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 68 | 83 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.2E-30 | 153 | 224 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSVYDPIHQI SMWGESFKSN GNLSAQIPLI DEADMKFDSQ SEDASFDILG TSNNYEQEAN 60 RPIDKIQRRL AQNREAARKS RLRKKAYVQQ LESSRLKLMQ LEQELDRARH QGMYIGGGGL 120 DSNNMGFAGC ANSGITTFEM EYGNWVEEQS RRITEMRGAL NAHIGDMELR ILVDGMMNHY 180 AEIFRMKSAA AKADVFYVMS GMWKTTAERF FLWIGGFRPS ELLK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.16599 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0239739.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT138317 | 0.0 | BT138317.1 Lotus japonicus clone JCVI-FLLj-21K17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027337983.1 | 1e-144 | transcription factor TGA4-like isoform X1 | ||||
Refseq | XP_027337984.1 | 1e-144 | transcription factor TGA4-like isoform X1 | ||||
Refseq | XP_027337985.1 | 1e-144 | transcription factor TGA4-like isoform X1 | ||||
Swissprot | Q39237 | 1e-100 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | A0A1S3TKH8 | 1e-143 | A0A1S3TKH8_VIGRR; transcription factor TGA4 isoform X2 | ||||
TrEMBL | Q93XA2 | 1e-143 | Q93XA2_PHAVU; TGA-type basic leucine zipper protein TGA1.1 | ||||
STRING | XP_007163615.1 | 1e-143 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1096 | 34 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 1e-103 | bZIP family protein |