PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0238279.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 201aa MW: 22549.7 Da PI: 7.8986 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.8 | 2.3e-33 | 35 | 92 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dg+nWrKYGqK+vkgse+prsYY+Ct+++C+++kkvers d++++ei+Y+g+Hnh+k Lj0g3v0238279.1 35 EDGFNWRKYGQKQVKGSENPRSYYKCTHPSCSMRKKVERSL-DGEITEIVYKGSHNHPK 92 7****************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-29 | 25 | 94 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.433 | 29 | 93 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-25 | 30 | 93 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-35 | 34 | 92 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-26 | 35 | 91 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MLPCKPEMHS NSIPGSHYSN STNAPQSVRE QRRSEDGFNW RKYGQKQVKG SENPRSYYKC 60 THPSCSMRKK VERSLDGEIT EIVYKGSHNH PKPQSTRRTS SQQFHQPSSS CTNSVISDIQ 120 EDSSASVGEE DFAAQTSQTS YSGGNDDDLG PEAKRWKGEN ENDCYSASES RTVKEPRVVV 180 QTRSEIIYLM MAIGGGNMDR K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-17 | 19 | 93 | 2 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-17 | 19 | 93 | 2 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.17904 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0238279.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147435 | 0.0 | BT147435.1 Lotus japonicus clone JCVI-FLLj-21E6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027352740.1 | 1e-101 | probable WRKY transcription factor 33 isoform X1 | ||||
Refseq | XP_027352741.1 | 1e-101 | probable WRKY transcription factor 33 isoform X2 | ||||
Swissprot | Q6B6R4 | 2e-49 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
TrEMBL | I3T3Y7 | 1e-128 | I3T3Y7_LOTJA; Uncharacterized protein | ||||
STRING | XP_007140176.1 | 3e-93 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1077 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 3e-51 | WRKY DNA-binding protein 33 |
Publications ? help Back to Top | |||
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