PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0236669.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 431aa MW: 47990.1 Da PI: 6.5043 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 135 | 180 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ Lj0g3v0236669.2 135 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 180 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 187 | 230 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ Lj0g3v0236669.2 187 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 230 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.17 | 130 | 181 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 134 | 183 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.2E-28 | 135 | 228 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.0E-16 | 135 | 180 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 136 | 188 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.20E-13 | 138 | 179 | No hit | No description |
PROSITE profile | PS51294 | 26.703 | 182 | 236 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-14 | 186 | 234 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 187 | 229 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.77E-12 | 189 | 229 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 189 | 235 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MKAWLPGSVI YSSQDNSNDA SSSYHSPHSM GIVYADMDSL SLCHNYGTVS SARDCYVSKE 60 GTSTSWSLSF MRECLPSNSE ENPNSDVLIG KGSDCSDEAG QNHENPNLIE EENPDENCMS 120 GKEKGSTGHS KLCARGHWRP AEDSKLKELV ALYGPQNWNL IAEKLEGRSG KSCRLRWFNQ 180 LDPRINRRAF SEEEEERLMQ AHRIYGNKWA MIARLFPGRT DNAVKNHWHV IMGRKYREQS 240 NAYRRRRLSQ SVYSRMDDQD TTSFVISREP VPAPPPLYCL NLHNSIVSNF PYAAASSFHG 300 VDQCSLNGLS SNMPPPHFGL YAPQKHLDFF SGGARSNNQI RWWDGPSDFI SSQPHSPQQC 360 LMLMQQQNNH NNFYSFSNST AAAAPTAGAQ ILGSEASLSS VAEHKDQALT SDPPDAIPSP 420 PFIDFLGVGS T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-33 | 135 | 235 | 7 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 247 | YRRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0236669.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 2e-88 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020215407.1 | 1e-176 | transcription factor CSA | ||||
TrEMBL | A0A371FUU9 | 1e-176 | A0A371FUU9_MUCPR; Transcription factor MYB105 (Fragment) | ||||
STRING | XP_007158647.1 | 1e-168 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-75 | myb domain protein 105 |