PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0236669.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 431aa    MW: 47990.1 Da    PI: 6.5043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0236669.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-16135180147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Lj0g3v0236669.1 135 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 180
                      899*****************************.***********996 PP
2Myb_DNA-binding55.51.3e-17187230146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Lj0g3v0236669.1 187 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 230
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17130181IPR017930Myb domain
SMARTSM007172.9E-14134183IPR001005SANT/Myb domain
SuperFamilySSF466898.2E-28135228IPR009057Homeodomain-like
PfamPF002499.0E-16135180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-25136188IPR009057Homeodomain-like
CDDcd001673.20E-13138179No hitNo description
PROSITE profilePS5129426.703182236IPR017930Myb domain
SMARTSM007172.7E-14186234IPR001005SANT/Myb domain
PfamPF002492.5E-14187229IPR001005SANT/Myb domain
CDDcd001679.77E-12189229No hitNo description
Gene3DG3DSA:1.10.10.602.4E-20189235IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MKAWLPGSVI YSSQDNSNDA SSSYHSPHSM GIVYADMDSL SLCHNYGTVS SARDCYVSKE  60
GTSTSWSLSF MRECLPSNSE ENPNSDVLIG KGSDCSDEAG QNHENPNLIE EENPDENCMS  120
GKEKGSTGHS KLCARGHWRP AEDSKLKELV ALYGPQNWNL IAEKLEGRSG KSCRLRWFNQ  180
LDPRINRRAF SEEEEERLMQ AHRIYGNKWA MIARLFPGRT DNAVKNHWHV IMGRKYREQS  240
NAYRRRRLSQ SVYSRMDDQD TTSFVISREP VPAPPPLYCL NLHNSIVSNF PYAAASSFHG  300
VDQCSLNGLS SNMPPPHFGL YAPQKHLDFF SGGARSNNQI RWWDGPSDFI SSQPHSPQQC  360
LMLMQQQNNH NNFYSFSNST AAAAPTAGAQ ILGSEASLSS VAEHKDQALT SDPPDAIPSP  420
PFIDFLGVGS T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-331352357107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247YRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0236669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-88AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215407.11e-176transcription factor CSA
TrEMBLA0A371FUU91e-176A0A371FUU9_MUCPR; Transcription factor MYB105 (Fragment)
STRINGXP_007158647.11e-168(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-75myb domain protein 105