PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0232569.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

FAR1

Protein Properties

Length: 447aa MW: 51903.9 Da PI: 7.6662

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0232569.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.6	2e-13	39	116	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek 72 +fY++YA+++GFsvr s+++k +ng ++ fvCskeg+ +++++ + + r+r+ tr gC a+ + k+ + Lj0g3v0232569.1 39 EFYKRYAHNAGFSVRCSSETKD-KNGVKRWKYFVCSKEGYLPNKTESvvqsestVKLKARRRSLTREGCYARAVFKLVE 116 6**************99998.88989********999999999988877778889********99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-11	39	116	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-11	111	159	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.348	349	385	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-8	360	387	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.2E-6	360	380	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MDSALNSSIE EENEWVPTCA EELKPKVGQQ FNTLEEGEEF YKRYAHNAGF SVRCSSETKD 60 KNGVKRWKYF VCSKEGYLPN KTESVVQSES TVKLKARRRS LTREGCYARA VFKLVEEEAM 120 GHHQPNIIIT DQDPAMKVAI EKIFNHSAHR FCMWHIMKKV SEKVGVSLNA NEEFNTDFKS 180 CIWRSETANE FETTWKSIII RFQLQKNDWL SHMYDIRSMW IPAYFKDIFL AGILRTTSRS 240 ESENSFYGKF LNPNVSLVEF WMRFDSAIEA QRQKELLADN DSLHSQPKLK LNRNLEKHGS 300 NVYTHENFYK FQKELWIACV DCGVESKKEE GGLEILHIID NSHANAKMRE VAYNPSNHNA 360 ECSCKMYQSQ GIPCRHILCV LKGKGLNEIP SNYILNRWTK LANRKPIFDT AENALEMCSK 420 PENERKIISD VWDHLFKCVE KAGNSKE

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MDSALNSSIE EENEWVPTCA EELKPKVGQQ FNTLEEGEEF YKRYAHNAGF SVRCSSETKD  60
KNGVKRWKYF VCSKEGYLPN KTESVVQSES TVKLKARRRS LTREGCYARA VFKLVEEEAM  120
GHHQPNIIIT DQDPAMKVAI EKIFNHSAHR FCMWHIMKKV SEKVGVSLNA NEEFNTDFKS  180
CIWRSETANE FETTWKSIII RFQLQKNDWL SHMYDIRSMW IPAYFKDIFL AGILRTTSRS  240
ESENSFYGKF LNPNVSLVEF WMRFDSAIEA QRQKELLADN DSLHSQPKLK LNRNLEKHGS  300
NVYTHENFYK FQKELWIACV DCGVESKKEE GGLEILHIID NSHANAKMRE VAYNPSNHNA  360
ECSCKMYQSQ GIPCRHILCV LKGKGLNEIP SNYILNRWTK LANRKPIFDT AENALEMCSK  420
PENERKIISD VWDHLFKCVE KAGNSKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0232569.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004526	0.0	AP004526.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT05E07, TM0055, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024630772.1	1e-176	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024636370.1	1e-177	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K3NAQ1	0.0	A0A2K3NAQ1_TRIPR; Protein FAR1-related sequence 5-like
STRING	AES98791	1e-151	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14928	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-59	FAR1-related sequence 5