PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0229569.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 122aa MW: 13707.2 Da PI: 8.0715 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 77 | 2.6e-24 | 30 | 74 | 4 | 49 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCH 49 + YkeClkNhAa++Gg+a+DGC+Efmp+ g+egt +alkC+AC+CH Lj0g3v0229569.1 30 ISYKECLKNHAAAIGGNATDGCCEFMPA-GDEGTLDALKCSACNCH 74 68*************************9.999************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-16 | 30 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.9E-21 | 30 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.4E-21 | 32 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.603 | 32 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MNSHTFVEAS KDMECSDFHV DKSLEKKIII SYKECLKNHA AAIGGNATDG CCEFMPAGDE 60 GTLDALKCSA CNCHXXXXXX XHSFPFWLIH LSTKVGQLVL LINLMRRTVT MGLRGWKIQR 120 KM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0229569.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555538.1 | 4e-30 | zinc-finger homeodomain protein 4 | ||||
Refseq | XP_028219678.1 | 4e-30 | zinc-finger homeodomain protein 4-like | ||||
TrEMBL | A0A371HZK3 | 3e-25 | A0A371HZK3_MUCPR; Zinc-finger homeodomain protein 4 (Fragment) | ||||
STRING | XP_004495441.1 | 2e-25 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-23 | homeobox protein 31 |