PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0226409.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 125aa    MW: 14736 Da    PI: 4.7485
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0226409.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-0766106445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      WT+eE + l d+++++  + +  Ia +++  Rt +++k+r++
  Lj0g3v0226409.3  66 WTKEETDELFDLCERFDLR-FIVIADRFPSSRTVEELKDRYY 106
                      *******************.*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162821.8E-2939107IPR032563DAMP1, SANT/Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-660107IPR009057Homeodomain-like
SuperFamilySSF466897.18E-762107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MKRSLGNGFL SPVLLVKIIF NYTIGFVLSM VFRLQGIISF AKYNKSVDII RYTDEEYDKH  60
LTNPMWTKEE TDELFDLCER FDLRFIVIAD RFPSSRTVEE LKDRYYSDEV FVCTFSFALG  120
VWEVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A2e-1840107778DNA methyltransferase 1-associated protein 1
4iej_A2e-1840107778DNA methyltransferase 1-associated protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.72981e-166floral bud| pod| root
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0226409.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1425871e-103BT142587.1 Lotus japonicus clone JCVI-FLLj-20D22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028753746.17e-42SWR1-complex protein 4
RefseqXP_028753747.17e-42SWR1-complex protein 4
RefseqXP_028753748.17e-42SWR1-complex protein 4
RefseqXP_028753749.17e-42SWR1-complex protein 4
RefseqXP_028753750.17e-42SWR1-complex protein 4
RefseqXP_028753751.17e-42SWR1-complex protein 4
SwissprotQ8VZL64e-36SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A1S3TRG13e-40A0A1S3TRG1_VIGRR; SWR1-complex protein 4
TrEMBLA0A445FJT33e-40A0A445FJT3_GLYSO; SWR1-complex protein 4 isoform A
TrEMBLA0A445FJW22e-40A0A445FJW2_GLYSO; SWR1-complex protein 4 isoform E
TrEMBLA0A445FJY82e-40A0A445FJY8_GLYSO; SWR1-complex protein 4 isoform G
TrEMBLA0A445FK172e-40A0A445FK17_GLYSO; SWR1-complex protein 4 isoform D
TrEMBLA0A4D6MBH03e-40A0A4D6MBH0_VIGUN; DNA methyltransferase 1-associated protein 1
TrEMBLI1NBE93e-40I1NBE9_SOYBN; Uncharacterized protein
TrEMBLK7MZL62e-40K7MZL6_SOYBN; Uncharacterized protein
STRINGGLYMA19G40630.15e-41(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49752330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.11e-38MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]