PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0224609.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 157aa MW: 18117.9 Da PI: 9.3526 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 65.6 | 9.6e-21 | 20 | 73 | 2 | 55 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55 ++v+YkeC++Nh asl ++DGC+Ef+++ e++t++a+ C CgCH nFH + Lj0g3v0224609.1 20 QEVVYKECKRNHSASLNRVSYDGCQEFLKAGVESNTKDAMLCVVCGCHQNFHVQ 73 6899**************************666699****************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-10 | 22 | 71 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.1E-18 | 22 | 73 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-16 | 24 | 71 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.247 | 24 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-17 | 82 | 153 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.21E-13 | 85 | 151 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-18 | 92 | 148 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00296 | 93 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MSQETMSDTE INFPPPGFDQ EVVYKECKRN HSASLNRVSY DGCQEFLKAG VESNTKDAML 60 CVVCGCHQNF HVQVRLNGET NPKKEMMSVP PKRKKRTVFT PISKNRMKEF AERIGWKLTT 120 GKKEEIDHLC LEIGISLKTF SVWLNNHRPR AIKMEKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0224609.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027338063.1 | 4e-42 | zinc-finger homeodomain protein 5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15282 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42780.1 | 2e-22 | homeobox protein 27 |