PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0224429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GATA | ||||||||
Protein Properties | Length: 528aa MW: 58159.3 Da PI: 6.9076 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50 | 4.2e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Lj0g3v0224429.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.9E-9 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.47E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 9.28E-16 | 6 | 51 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.9E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.2E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF13919 | 6.9E-7 | 293 | 370 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHS RADNVDNDDQ 60 RVSRLKNMSL NKNKEVKFVK RKLNHDNAAS GGFTPDYYQG FQKFVDEDTS NRSSSGSAIS 120 NSESCAQFGG MDASDLTGPA QSVVWDTVVP SKKRTCAGRP KHSSVEKLTK DLCSILHEQQ 180 SYFSATSEEE LLFESETPMV SVEIGHGSIL IRHPNSIARE EESEASSLSV DNKQCLMSEA 240 YSYSGTIPMH SDSSGMNFSS QGVEKVRKSA GHTIQLEQLE RGKSQLEKLD VPGNHVSSLC 300 SIDLNDVVNY EVFSRNLTNE EKQQLLKYLP VVDTAKLPDS LKIMFDSFQF KENFSYFQQL 360 LGEGVFDISL VGAKPEACKT LKRLALSNLS KSKWVECYNS LKKGGNQAGK CIDLGSTAMA 420 SSNVANVKRL RYSQNQNFPE LKTMRSPKRV TIKASCEGKE VAEEGSNCSP RSLFALPGDG 480 SLCMLDSLNF VAESSDQDLL LEVPSNSSFP QAELLHPTSS SWCPCQHQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.4360 | 0.0 | pod |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0224429.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524128.1 | 0.0 | GATA transcription factor 26 | ||||
Refseq | XP_028231829.1 | 0.0 | GATA transcription factor 26-like | ||||
Swissprot | Q8W4H1 | 1e-148 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A445KK78 | 0.0 | A0A445KK78_GLYSO; GATA transcription factor 26 | ||||
TrEMBL | I1K0V3 | 0.0 | I1K0V3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G05320.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4424 | 31 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-141 | GATA transcription factor 26 |