PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0221649.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 296aa    MW: 31860.1 Da    PI: 6.8032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0221649.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-111256345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k+++ 
  Lj0g3v0221649.1 12 EWSREQDKAFENALATYPEDdsdRWEKIAADVP-GKTLEEIKHHYE 56
                     7********************************.**********96 PP
2Myb_DNA-binding43.85.9e-14123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Lj0g3v0221649.1 123 AWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 167
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.704863IPR017884SANT domain
SMARTSM007171.8E-10961IPR001005SANT/Myb domain
SuperFamilySSF466891.66E-111167IPR009057Homeodomain-like
CDDcd001679.17E-101259No hitNo description
Gene3DG3DSA:1.10.10.601.9E-51256IPR009057Homeodomain-like
PfamPF002495.6E-91256IPR001005SANT/Myb domain
PROSITE profilePS5129418.172115172IPR017930Myb domain
SuperFamilySSF466894.19E-17118173IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-17120170IPR006447Myb domain, plants
SMARTSM007177.6E-11120170IPR001005SANT/Myb domain
CDDcd001672.34E-10123168No hitNo description
Gene3DG3DSA:1.10.10.603.1E-11123166IPR009057Homeodomain-like
PfamPF002498.0E-12123167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTVDEVGSSS SEWSREQDKA FENALATYPE DDSDRWEKIA ADVPGKTLEE IKHHYELLVD  60
DVNQIDSGCV PVPSYNSFSE GSRSHASDEG AGKKGGHPWN YNSESNHGTK ASRSDQERRK  120
GIAWTEEEHR LFLLGLDKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR  180
SSIHDITSVN NGDISAPQGP ITGQANDSAE NSSGKSSKQT PPTPTGAPGV GIYGVPTIGQ  240
PVGGPLVSAV GTPVNLAGPA HMAYGLRAPV PGAVVPGAPM NLGHVPYPMP HTSAHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1713771175RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.10220.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0221649.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1430810.0BT143081.1 Lotus japonicus clone JCVI-FLLj-7P8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220283.10.0transcription factor SRM1
RefseqXP_020220361.10.0transcription factor SRM1
RefseqXP_020220433.10.0transcription factor SRM1
RefseqXP_029127979.10.0transcription factor SRM1
SwissprotQ9FNN61e-127SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A151UD740.0A0A151UD74_CAJCA; Myb-like protein J
STRINGXP_004513249.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-121MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]