PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0217379.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

M-type_MADS

Protein Properties

Length: 63aa MW: 7026.21 Da PI: 10.6654

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0217379.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.5	2e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skR+ngilKKA+E+ vLCda+v++iif+ +gk+++y+s Lj0g3v0217379.1 9 KRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYIS 59 79***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.721	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.13E-34	2	62	No hit	No description
SuperFamily	SSF55455	3.92E-29	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-28	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-28	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEITVLCD AQVSLIIFAA SGKMHDYISP 60 STT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-18	1	59	1	59	MEF2 CHIMERA
6byy_B	2e-18	1	59	1	59	MEF2 CHIMERA
6byy_C	2e-18	1	59	1	59	MEF2 CHIMERA
6byy_D	2e-18	1	59	1	59	MEF2 CHIMERA
6bz1_A	2e-18	1	59	1	59	MEF2 CHIMERA
6bz1_B	2e-18	1	59	1	59	MEF2 CHIMERA
6bz1_C	2e-18	1	59	1	59	MEF2 CHIMERA
6bz1_D	2e-18	1	59	1	59	MEF2 CHIMERA
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.11513	1e-97	floral bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269\|PubMed:17920788, ECO:0000269\|Ref.1}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269\|PubMed:23181568, ECO:0000269\|Ref.1, ECO:0000305\|PubMed:17920788}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0217379.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT135877	1e-102	BT135877.1 Lotus japonicus clone JCVI-FLLj-9P8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001235385.1	3e-38	uncharacterized protein LOC100499997
Refseq	NP_001241026.1	2e-38	uncharacterized protein LOC100817554
Refseq	XP_007161433.1	2e-38	hypothetical protein PHAVU_001G068200g
Refseq	XP_014504222.1	2e-38	floral homeotic protein GLOBOSA
Refseq	XP_017429903.1	2e-38	PREDICTED: floral homeotic protein GLOBOSA-like
Refseq	XP_020220122.1	2e-38	floral homeotic protein GLOBOSA
Refseq	XP_020984686.1	1e-38	floral homeotic protein PMADS 2 isoform X2
Refseq	XP_027332702.1	2e-38	floral homeotic protein GLOBOSA-like
Refseq	XP_027939831.1	2e-38	floral homeotic protein GLOBOSA-like
Refseq	XP_028197150.1	2e-38	floral homeotic protein GLOBOSA-like
Refseq	XP_028198374.1	3e-38	floral homeotic protein PMADS 2-like
Swissprot	Q0HA25	3e-35	MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBL	A0A371IBC9	1e-37	A0A371IBC9_MUCPR; Floral homeotic protein GLOBOSA (Fragment)
TrEMBL	A0A445CDJ0	1e-37	A0A445CDJ0_ARAHY; Uncharacterized protein
STRING	GLYMA13G09660.1	1e-37	(Glycine max)
STRING	GLYMA14G24590.1	1e-37	(Glycine max)
STRING	XP_007161433.1	9e-38	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	3e-31	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]