PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0215159.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | FAR1 | ||||||||
Protein Properties | Length: 113aa MW: 13061.1 Da PI: 4.5423 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31.3 | 6.5e-10 | 66 | 110 | 2 | 47 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 fY++YA+ GF rk+ +k ++g+i++r++vC+k g+r+e++ k Lj0g3v0215159.2 66 FYHKYAQYRGFASRKDDVYKD-NDGNIVTRQLVCNKAGRRHEKHFK 110 9******************98.8999**************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-7 | 66 | 110 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MATFGEEGCV NLSDDVNDLV NNEEENQHEK DSKSDSEGEC YKKINELTAD DIRGLEFSTE 60 EEGCLFYHKY AQYRGFASRK DDVYKDNDGN IVTRQLVCNK AGRRHEKHFK NND |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0215159.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT134973 | 0.0 | BT134973.1 Lotus japonicus clone JCVI-FLLj-24B19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015970857.1 | 5e-20 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | I3S3C6 | 3e-75 | I3S3C6_LOTJA; Uncharacterized protein | ||||
STRING | AET02124 | 1e-15 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 4e-10 | FAR1-related sequence 7 |