PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0212129.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 319aa    MW: 36208.3 Da    PI: 8.6253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0212129.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-092974346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     rWT  E +l+ +a + + ++   +W+++a++++ g+t ++++  +q 
  Lj0g3v0212129.2 29 RWTSAENKLFENALAVYDKDmpdRWHRVAEMIP-GKTVEDVIRQYQE 74
                     9********************************.***********97 PP
2Myb_DNA-binding44.63.4e-14134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Lj0g3v0212129.2 134 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 178
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.1272580IPR017884SANT domain
SMARTSM007171.4E-72678IPR001005SANT/Myb domain
SuperFamilySSF466891.88E-102882IPR009057Homeodomain-like
PfamPF002494.7E-72975IPR001005SANT/Myb domain
CDDcd001672.37E-72975No hitNo description
PROSITE profilePS5129420.486127183IPR017930Myb domain
SuperFamilySSF466898.28E-17128182IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17130182IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.7E-12131178IPR009057Homeodomain-like
SMARTSM007175.3E-13131181IPR001005SANT/Myb domain
PfamPF002491.2E-12134178IPR001005SANT/Myb domain
CDDcd001674.68E-11134179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKWEMEILSP APFSPNSSWC VEDNNRSTRW TSAENKLFEN ALAVYDKDMP DRWHRVAEMI  60
PGKTVEDVIR QYQELEVDVC NIEAGLVPVP GYTTPISPFT LDWVNTPGYD GFKGSGKRSS  120
SVRTPEQERK KGVPWTEEEH KLFLLGLKKY GKGDWRNISR NFVITRTPTQ VASHAQKYFI  180
RQLSGGKDKR RASIHDITTV NLSETTNNSS PEDTNRSTSP QHSMMLSHQH QYQQQPNSTP  240
ITPRSHFQWN NQPNSGAAMN FNPAHEKVFM SPHGVNSYGV SMQGQNLHKG ALHESSYLGP  300
LSQNMVFQGQ QSSQQYSHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1530941175RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.200920.0floral bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0212129.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027334971.11e-179transcription factor DIVARICATA-like
SwissprotQ8S9H71e-121DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A151U9Y91e-177A0A151U9Y9_CAJCA; Myb-like protein J
STRINGXP_007146740.11e-174(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-88MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]