PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0209729.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YB
Protein Properties Length: 149aa    MW: 16967.9 Da    PI: 7.1294
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0209729.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB169.34.7e-5321117197
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      v+eq+r+lPianv+rimk+ lP+nakisk+aket+qecvsefisfvtseas+kc++e+rkt+ng+d++wal+tlGf++y+++++ yl++yrele
  Lj0g3v0209729.1  21 VKEQERLLPIANVGRIMKQSLPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGEDICWALTTLGFDEYADTMRRYLHRYRELE 114
                      589******************************************************************************************* PP

            NF-YB  95 gek 97 
                       +k
  Lj0g3v0209729.1 115 VDK 117
                      987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.5E-5220136IPR009072Histone-fold
SuperFamilySSF471131.71E-3824134IPR009072Histone-fold
PfamPF008082.0E-282791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-185573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.5E-187492No hitNo description
PRINTSPR006152.5E-1893111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MVDINIGGRG SSSSDINGGG VKEQERLLPI ANVGRIMKQS LPQNAKISKE AKETMQECVS  60
EFISFVTSEA SEKCRKERRK TVNGEDICWA LTTLGFDEYA DTMRRYLHRY RELEVDKQLN  120
SNQENRGNSP HHEEKDHELH KLHPRGGVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4621112192Transcription factor HapC (Eurofung)
4g92_B8e-4621112192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0209729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508609.13e-71nuclear transcription factor Y subunit B-4-like
SwissprotO822485e-52NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1S2YR616e-70A0A1S2YR61_CICAR; nuclear transcription factor Y subunit B-4-like
STRINGXP_004508609.11e-70(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-54nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]