PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0208309.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 526aa    MW: 58963.3 Da    PI: 5.9633
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0208309.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.43.9e-30206263260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +Dgy+WrKYG K+vkgse+prsYY+Ct+++C++kkkve+s  +++++ei+Y+g+Hnh+k
  Lj0g3v0208309.1 206 EDGYKWRKYGEKQVKGSENPRSYYKCTHPSCTMKKKVEKSV-EGHITEIVYKGTHNHPK 263
                      7****************************************.***************85 PP
2WRKY102.13.3e-32355413159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+C ++gC v+k++er+a+d k+v++tYeg+Hnh+
  Lj0g3v0208309.1 355 LDDGYRWRKYGQKVVKGNPNPRSYYKCVTPGCAVRKHIERAANDMKAVITTYEGKHNHD 413
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-26195264IPR003657WRKY domain
SuperFamilySSF1182903.01E-23202264IPR003657WRKY domain
SMARTSM007741.9E-31205263IPR003657WRKY domain
PROSITE profilePS5081122.079206264IPR003657WRKY domain
PfamPF031067.7E-23206262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-36340415IPR003657WRKY domain
SuperFamilySSF1182905.62E-28347415IPR003657WRKY domain
PROSITE profilePS5081137.126350415IPR003657WRKY domain
SMARTSM007741.3E-35355414IPR003657WRKY domain
PfamPF031061.8E-24356413IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSFSFSNLLS NNNNNDYNLT MDHDEDDKQR TSQNNDNFKS FAPPSLSLSP FSTTSDFPPG  60
FSPSEFFNSP MFSSPNIPAS YTTTEPCSAQ SQSMNQMNSS TEEEENRNYS ELTFQNQTRQ  120
MPLFQSSTNM SEMEPLKKQD TMTSNETAKQ IEFSFEETAV KSENPSTQSF FSSELTTIKP  180
EVQPNSGHFN PSNASMSIRE QQRRSEDGYK WRKYGEKQVK GSENPRSYYK CTHPSCTMKK  240
KVEKSVEGHI TEIVYKGTHN HPKPQSTKRT SSQSILQESV SCNNSGIPEL SMGEEDLDQT  300
SQLSYSGGND DDLGPDAKRW KGEDENDGYS YSAPGSRTVK EPRVVVQTTS EIDILDDGYR  360
WRKYGQKVVK GNPNPRSYYK CVTPGCAVRK HIERAANDMK AVITTYEGKH NHDVPVGRGI  420
ASHNINRTSL NSNTTNIATP APIRPSVVTN CSSSASFANS LHDSKLEMSG NQEYFHVNKL  480
FNPGSFGYSG LNRSMGSYTN SEQYSDATYS ANDDSLLQSF LSKNYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-36206415877Probable WRKY transcription factor 4
2lex_A9e-36206415877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.104460.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0208309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336197.10.0probable WRKY transcription factor 33
TrEMBLA0A371FLT60.0A0A371FLT6_MUCPR; WRKY transcription factor WRKY24 (Fragment)
STRINGXP_007134624.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-93WRKY DNA-binding protein 33