PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj0g3v0205169.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 306aa MW: 32622.5 Da PI: 4.8799 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 81.4 | 1.3e-25 | 188 | 270 | 1 | 83 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfske 83 k+f rlws+eDei++L+Gl df +ktg +p + dafy+fv +s++++++++q+ +K+rrLKkKf++ k k+g+ p+f k Lj0g3v0205169.1 188 KQFTRLWSDEDEIAILKGLADFISKTGNDPLKYPDAFYDFVIRSLQADATRTQVKDKVRRLKKKFQTLAGKGKNGETPKFPKV 270 5799***************************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.8E-22 | 190 | 269 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence Send to blast |
MAQKQKRPSP LEDPPTASSS SESEEEDDQP LSQVKHAAAE EEELSSEEEG SSEEEEEDET 60 TAPAPPAATT SHTKPPQPEP ESDSATQSDS ESDTDSDQAP SASAPTPNPK VKPLATKPMD 120 QTQTHKPKAQ PSPAPAKSAA KRAAESNANA GDSKRAKKKA VDSAPAAAAG SDEEMEEDGK 180 KSGNDSKKQF TRLWSDEDEI AILKGLADFI SKTGNDPLKY PDAFYDFVIR SLQADATRTQ 240 VKDKVRRLKK KFQTLAGKGK NGETPKFPKV QRVGGGGANE AAAAEEKPKA NGKPAKSPCK 300 ESERRS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj0g3v0205169.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027329839.1 | 2e-70 | probable transcription factor At1g11510 | ||||
Refseq | XP_027329849.1 | 2e-70 | probable transcription factor At1g11510 | ||||
Refseq | XP_027329858.1 | 2e-70 | probable transcription factor At1g11510 | ||||
TrEMBL | A0A151S0W4 | 1e-57 | A0A151S0W4_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA13G32440.2 | 2e-55 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25650.1 | 7e-16 | DNA-binding storekeeper protein-related transcriptional regulator |