PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0202329.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 238aa    MW: 27290.9 Da    PI: 7.7806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0202329.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-1170117154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ +hn+ Er+RR++iN+ +  Lr+llP        K+s  ++  ++++YI +L
  Lj0g3v0202329.1  70 KKLNHNASERNRRNKINTLITLLRSLLPGK------KMSIQATISQVTRYIPEL 117
                      6789***********************998......999999999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.96969117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1269137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-1370136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-1070122No hitNo description
PfamPF000102.5E-870117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-875123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MLAFSATSVF SNSNIEWLLA EEPFSYNHHH NYLYNESVSS LEYAFPPHQP LQPPQAEEVK  60
RSMGPPSMAK KLNHNASERN RRNKINTLIT LLRSLLPGKK MSIQATISQV TRYIPELEQQ  120
VEGLIRKQEE LRSRISRQRD DAMDIGSKMT IPHDNSNFKV STSWINDNEA AIHISSCEVY  180
IMLNASSTET FEGRVFYNLH FQVEKAHRIE SCILTEKLLS IYEKKQSISN QLGGGAWH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.18760.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0202329.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1467191e-41BT146719.1 Lotus japonicus clone JCVI-FLLj-11D4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162129.11e-68hypothetical protein PHAVU_001G126400g
TrEMBLI3T1X16e-78I3T1X1_LOTJA; Uncharacterized protein
STRINGXP_007162129.15e-68(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-33bHLH family protein