PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0198589.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRF
Protein Properties Length: 368aa    MW: 41634.9 Da    PI: 8.0976
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0198589.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.99.8e-2576119144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Lj0g3v0198589.1  76 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGKNRSRKPVE 119
                      79***************************************987 PP
2QLQ55.41.9e-19842236
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                     +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  Lj0g3v0198589.1  8 PFTPSQWQELEHQALIYKYMASGNSIPPDLLFTIR 42
                     8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.3E-12743IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.9E-15842IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.927843IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9876120IPR014977WRC domain
PfamPF088791.7E-2077119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNGRNRFPFT PSQWQELEHQ ALIYKYMASG NSIPPDLLFT IRRSYLDSPL PSRLMPNQSQ  60
HFGWNYLQMG LGRKIDPEPG RCRRTDGKKW RCSKDAYPDS KYCERHMHRG KNRSRKPVEV  120
LKTSTTTNAT PVAFSSITRN SPALTPTNNS LSPLSSSCVS SETNHHQSQH SGFYGSHLQH  180
SFLYDHPSSR PSGIGFSFED NNSSASLFQD TGSYSQTNDN CRYVYGQKEE VDEHAFFTEP  240
SGVMKSFSAS SMDDPWQLTP LTMSSSSSSS TSKQRSCSGL SSDYSYLQLQ SLSEHSKQQQ  300
QDQGCYLLGG EIMKMGKEEP QRTVHRFFDE LPHKSREGSW LDLDDKSSTT QLSISIPTFN  360
SRTHHDGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0198589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098460.0AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020235539.11e-175growth-regulating factor 6
TrEMBLV7B1C91e-173V7B1C9_PHAVU; Uncharacterized protein
STRINGXP_007138669.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.19e-55growth-regulating factor 5